Detailed information on CNT30350515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Eragrostis tefOryza sativa21.5336.4388200reverse complement
CNT30554393Eragrostis tefOryza glaberrima13.5632.4787.3126reverse complement
CNT30593715Eragrostis tefEragrostis curvula72.4475.7992.57673reverse complement

Expression of CNT30350515

Peptides detected in this lncRNA

>peptide 1 (95 aa)
ASPTHASYATTSPSHTSYAVSPYPYDRTAGHGMYQSPQAIREPYVYPVKEVANVGIAMPYPSPPMSYPAPYGGYGNRMGAYNNGMAPAFHQAYYR*

>peptide 2 (33 aa)
MMVLVLHSSFDCVCCMCLLYVCLMLAVVQLDLF*

>peptide 3 (33 aa)
MVGMATGWELTTTEWLLPSTKLTTGRFSLRKCR*

>peptide 4 (51 aa)
RPPLPMHRMPQPPHLTHHMQSPPILMIGRLDMACTRAHKLLGNHMCTQLRR*

>peptide 5 (52 aa)
MLDHYFFTAKEPGCKLCMLSVNPIAYVILFRTMRKIQKDEQCNPQVLDVPRN*

Sequence

>CNT30350515
CGGCCTCCCCTACCCATGCATCGTATGCCACAACCTCCCCATCTCACACATCATATGCAGTCTCCCCCTATCCTTATGATAGGACGGCTGGACATGGCAT
GTACCAGAGCCCACAAGCTATTAGGGAACCATATGTGTACCCAGTTAAGGAGGTAGCCAATGTTGGCATTGCCATGCCATACCCCTCCCCACCCATGAGC
TACCCCGCCCCCTATGGTGGGTATGGCAACAGGATGGGAGCTTACAACAACGGAATGGCTCCTGCCTTCCACCAAGCTTACTACCGGTAGGTTCAGTCTG
AGAAAGTGTCGCTGATGAATGACATGACAACAACTGATGATGCCAACGACTCGAAATCGCACAATGGCCCTATTTTGTAGTGACTGACTACAACGGTAGG
TTGGGAATCTCATCTCATATGTTCTTACCACTACTACTAAGCGCGTTGCATTAGTTATCTTCTCATGTTAGATCACTACTTTTTTACTGCTAAGGAACCT
GGATGTAAATTATGTATGCTATCTGTGAACCCTATCGCTTATGTAATTCTATTCAGAACTATGAGAAAAATCCAAAAAGATGAGCAATGTAATCCTCAAG
TACTGGATGTACCACGAAATTAATTAAGTGTACTTTTAGTTTAGTTGTGTTGTGTTGATAAGTGATCATGATGGTTTTGGTACTTCACTCTAGTTTTGAT
TGTGTTTGCTGTATGTGTTTATTGTATGTTTGTCTCATGTTAGCTGTTGTGCAGCTGGACTTGTTTTAGGTGGGGAGGTGTTGCTCATGTTAGATCATAA
TGGTGCGGGAGCGTGGGCACATCTCACATGGCTCTCCTGTCTGATTTGGTACTAGTGTAGCGGCACTAGCAGGCAGCCCCACAGTTGCAAATGCATGCAT
CATCTCGTGGTTCTAGTACCTTAATTTCC