Detailed information on CNT30362478


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3013388Sorghum bicolorZea mays90.11100.1391.07784forward
CNT30593715Sorghum bicolorEragrostis curvula77.4775.985.31674forward

Expression of CNT30362478

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRRELNTTHLVVVVRTYKMRYPTYRCSQSLQNRAIVRF*

>peptide 2 (52 aa)
MGGRLGKCGGSWERRHTSIVSETTCLGRRHWASIACTDALGCRAAAAATGSA*

>peptide 3 (35 aa)
MLPFSSQSWLSPALQVASEDPPVKTQLLGYGPQHT*

>peptide 4 (38 aa)
MMGGTGRLWRMLGGKGRLWHMRCGKGRSWHMRHGRETG*

>peptide 5 (57 aa)
MSFISDLFCFLTEPTGSKPGGRQEPFHWCKLPSHCHNRHRGQGSSWVGWSMAWECRR*

>peptide 6 (65 aa)
MRLVAGPLLLPLVALDAAFFFSVLAFSSSSSCFRRSSSENSASRLWSSTHLMTARSADCSFLFALL

Sequence

>CNT30362478
CTTAGTAGTAAAAAAAGGTAGTGGTCTAAGATGAGACGAGAGCTAAACACAACACATCTAGTAGTAGTGGTAAGGACATATAAGATGAGATACCCAACCT
ACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGTGCGATTCTGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACTTGTTTTGTT
TCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGGTGTAAGCTGCCATCCCATTGCCATAACCGCCATAGGGGGCAGGG
TAGCTCATGGGTGGGGTGGAGTATGGCATGGGAATGCCGACGTTGACACTGGCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTGATCACCGGTGGGC
TCCGGTTGCAGTAGAGGCCATGTCCAACCGGCCTGTCATAGGGGTAAGGGGAGGCTGTGGTGTATGATGGGTGGGACGGGGAGGCTGTGGCGTATGTTGG
GTGGGAAGGGGAGGCTGTGGCATATGCGGTGTGGGAAGGGGAGGTCGTGGCATATGAGGCATGGGAGGGAGACTGGGTAAATGTGGTGGGAGCTGGGAAA
GAAGACACACAAGCATTGTTAGTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCCTCCATTGCTTGCACGGATGCGCTTGGTTGCAGGGCCGCTGCTGC
TGCCACTGGTAGCGCTTGATGCTGCCTTTTTCTTCTCAGTCTTGGCTTTCTCCAGCTCTTCAAGTTGCTTCCGAAGATCCTCCAGTGAAAACTCAGCTTC
TAGGTTATGGTCCTCAACACACTTAATGACAGCTCGCAGTGCAGACTGCTCTTTCTTGTTCGCATTGCTC