Detailed information on CNT30590460


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 2e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618377Musa acuminataSesamum indicum53.6555.2385.92206forward
CNT30381152Musa acuminataManihot esculenta69.0134.4684.53265forward
CNT30503993Musa acuminataNicotiana attenuata63.5488.7386.07244forward
CNT30224723Musa acuminataHordeum vulgare53.6529.685.44206forward
CNT30232362Musa acuminataAnanas comosus63.5442.7383.2244forward
CNT30127375Musa acuminataCorymbia citriodora52.636.286.63202forward
CNT30423483Musa acuminataPapaver somniferum69.0125.8385.66265forward
CNT3053016Musa acuminataAmborella trichopoda56.2523.4385.65216forward
CNT30148140Musa acuminataBrachypodium distachyon69.277084.96266forward
CNT30101006Musa acuminataOryza rufipogon69.0138.0784.15265forward

Expression of CNT30590460

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LMSLTAKRPRGGYSEKVSTTMGLVGIILTKPASPFFKNFGSFSSSLLDRLSILVRSSANLTAMWEVWQSSTGAYPLPI*

>peptide 2 (36 aa)
PHVPHSKTTEGWVLGEGFDDHGLGGNHLDKTSITIL*

Sequence

>CNT30590460
GCCTCATGTCCCTCACAGCAAAACGACCGAGGGGTGGGTACTCGGAGAAGGTTTCGACGACCATGGGCTTGGTGGGAATCATCTTGACAAAACCAGCATC
ACCATTCTTTAAGAACTTTGGTTCCTTCTCAAGTTCCTTACTGGACCGCCTATCGATCTTGGTGAGAAGCTCAGCAAACTTAACAGCAATGTGGGAGGTG
TGGCAGTCAAGCACAGGTGCATATCCATTGCCGATCTGACCGGGATGGTTCATGATAATAACCTGTGATAAGAAACCTCCTTCACAATCTCATCATATCT
AGCCTTGGAGTACTTTGGTGTGGTGGCATCCATCTATTATGAAATGGAAAAGAATAATTTATAAACGCATGAAGTTCATTAAAA