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Detailed information on CNT3053016


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 9e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672620Amborella trichopodaSetaria viridis32.4347.6184.62299forward
CNT30200381Amborella trichopodaPisum sativum28.4245.1783.97262forward
CNT30503993Amborella trichopodaNicotiana attenuata19.7466.1886.81182forward
CNT30160118Amborella trichopodaPistacia vera32.8632.1385.48303forward
CNT30562820Amborella trichopodaActinidia chinensis32.6563.3783.39301forward
CNT30590460Amborella trichopodaMusa acuminata23.4356.2585.65216forward
CNT30614218Amborella trichopodaArabis alpina29.2846.6382.59270forward
CNT30232362Amborella trichopodaAnanas comosus45.9974.2681.37424forward
CNT30368719Amborella trichopodaSorghum bicolor32.4322.0885.62299forward
CNT30423542Amborella trichopodaPapaver somniferum54.4547.7284.06502forward
CNT30101006Amborella trichopodaOryza rufipogon32.4342.9684.28299forward

Expression of CNT3053016

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MSLTANLPRGGYSEKVSTTMGFVGIILTNPASPFFKNLGSFSSSFPDRLSIFVRISANLTAMWQV*

>peptide 2 (46 aa)
MVHLNRLNFSGEPRRGKCDNHTRLKDTSLHSAHRDSPNTSNLVDILK

>peptide 3 (29 aa)
MQKKKHTIESRSRKQYHRQKDPRPRFTSS*

>peptide 4 (42 aa)
NLAKNHKRCVGNRWKFWTQVKLNSSLQITIITIYSSNKQLTK*

Sequence

>CNT3053016
AATTTAGCCAAAAATCACAAGAGATGCGTAGGCAACAGGTGGAAATTCTGGACCCAAGTCAAACTTAACTCATCACTTCAAATCACCATAATCACAATCT
ATTCTTCAAATAAACAACTAACAAAATAGACTCGTACATATTCCATGTCCCGGACAAAAAGATAAATAGAGTGCAAAATGTCTTCTTTTTGTTTTTACTA
TAGCGAAAAAGAAGGGGGAAGAAGAAAACCTCCCTAATCAGCACGCCACCGCCTGTCTAGCACCCAGTTCTGCATTGTCCGCCCGCCAAATAACAGCAAC
AAACCAAAACACAGAACAAAATAACGAAAACATAAAGGAAATGCAAAAGAAGAAACACACGATAGAGTCCAGAAGCAGAAAACAGTATCACCGACAAAAG
GACCCAAGACCTCGGTTCACTTCTTCTTAGCAGCTGACTTGGTCACCTTGGCACCACTTGGGTCCTTCTTCTCAACAGCCTTGATCACACCAACAGCCAC
GGTTTGCCTCATGTCCCTGACAGCAAACCTACCAAGAGGTGGGTACTCAGAGAAGGTCTCAACAACCATGGGCTTCGTGGGGATCATCTTAACGAATCCA
GCATCACCATTCTTCAAGAATTTGGGCTCCTTCTCAAGCTCTTTTCCTGACCGCCTATCAATCTTTGTGAGGATCTCAGCAAACTTGACGGCAATGTGGC
AGGTGTGACAGTCAAGCACAGCAACATTCTTCACATTGAACCCCACATTGTCACCAGGGAGAGCCTCTTGAAGAGCCTCATGGTGCATCTCAACAGACTT
AACTTCAGTGGTGAGCCCAGAAGGGGCAAATGTGACAACCATACCAGGCTTAAGGACACCAGTCTCCACTCGGCCCACAGGGACAGTCCCAATACCTCCA
ATCTTGTAGACATCCTGAAGTG