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Detailed information on CNT30503993


BLAST search results

BLAST vs Swiss-Prot:
sp|P43643|EF1A_TOBAC, E-value = 2e-51

BLAST vs NONCODE:
NONBNAT003157, E-value = 4e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672620Nicotiana attenuataSetaria viridis81.4535.6788.39224forward
CNT30639730Nicotiana attenuataNymphaea colorata80.3624.0585.07221forward
CNT30535563Nicotiana attenuataEucalyptus grandis84.7328.5587.98233forward
CNT30546678Nicotiana attenuataIpomoea triloba85.8217.5591.53236forward
CNT30698284Nicotiana attenuataQuercus lobata48.7346.8590.3134forward
CNT30377782Nicotiana attenuataArabidopsis thaliana84.7323.0788.84233forward
CNT30618377Nicotiana attenuataSesamum indicum66.1848.7989.01182forward
CNT30381152Nicotiana attenuataManihot esculenta88.7331.7386.48244forward
CNT30629544Nicotiana attenuataVigna unguiculata69.8225.490.1192forward
CNT30194937Nicotiana attenuataPisum sativum85.8223.6288.98236forward
CNT30160118Nicotiana attenuataPistacia vera84.7324.7187.98233forward
CNT30637620Nicotiana attenuataCapsicum annuum69.821092.19192forward
CNT30121467Nicotiana attenuataPhyscomitrium patens85.8235.680.93236forward
CNT30224163Nicotiana attenuataHordeum vulgare69.4528.4686.91191forward
CNT30562820Nicotiana attenuataActinidia chinensis84.3648.8486.64232forward
CNT30590460Nicotiana attenuataMusa acuminata88.7363.5486.07244forward
CNT30539604Nicotiana attenuataBrassica napus57.4518.4894.3158forward
CNT30146334Nicotiana attenuataMedicago truncatula85.8223.7488.98236forward
CNT3075495Nicotiana attenuataBrassica juncea84.7320.3889.7233forward
CNT30265127Nicotiana attenuataBrassica rapa48.7352.5588.81134forward
CNT30611975Nicotiana attenuataArabis alpina74.9115.4389.81206forward
CNT3010836Nicotiana attenuataZea mays70.5558.2687.11194forward
CNT30232362Nicotiana attenuataAnanas comosus81.8239.484225forward
CNT30647369Nicotiana attenuataRosa chinensis84.7325.7287.55233forward
CNT30721807Nicotiana attenuataTriticum spelta55.6417.0287.58153forward
CNT30423884Nicotiana attenuataPapaver somniferum88.7329.7986.89244forward
CNT30644842Nicotiana attenuataCannabis sativa59.6440.5987.2164forward
CNT3053016Nicotiana attenuataAmborella trichopoda66.1819.7486.81182forward
CNT30148140Nicotiana attenuataBrachypodium distachyon69.8250.5389.58192forward
CNT30101006Nicotiana attenuataOryza rufipogon68.3627.0189.36188forward
CNT30496615Nicotiana attenuataDigitaria exilis68.3620.7391.49188forward
CNT30116376Nicotiana attenuataOryza nivara46.1823.3990.55127forward
CNT30176122Nicotiana attenuataVigna angularis84.7320.5887.55233forward
CNT3050518Nicotiana attenuataCucumis sativus69.0930.686.32190forward

Expression of CNT30503993

Peptides detected in this lncRNA

>peptide 1 (90 aa)
VPHSKTSQWWVLREGLNNHGLGGKHLNHTSITILQKLGLLLNLLTRTPVDLGQNFCKLDSNVGGVAVKHWSISISNLSWMVGRNLLHDFIV

>peptide 2 (81 aa)
MSLTAKRPNGGYSEKVSTTMGLVGSILTIPASPFFKNLGSFSISLPERLSILVKISANLTAMWEVWQSSTGAYPFPICPGW*

Sequence

>CNT30503993
ATGTCCCTCACAGCAAAACGTCCCAATGGTGGGTACTCAGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAAGCATCTTAACCATACCAGCATCACCAT
TCTTCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCGATCTTGGTCAAAATTTCTGCAAACTTGACAGCAATGTGGGAGGTGTGGCA
GTCAAGCACTGGAGCATATCCATTTCCAATCTGTCCTGGATGGTAGGAAGAAACCTCCTTCACGATTTCATCGTA