Detailed information on CNT30381152


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 7e-177

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503993Manihot esculentaNicotiana attenuata31.7388.7386.48244forward
CNT30590460Manihot esculentaMusa acuminata34.4669.0184.53265forward
CNT30647369Manihot esculentaRosa chinensis50.242.685.75386forward
CNT30426682Manihot esculentaPapaver somniferum71.6541.6885.48551forward
CNT30148140Manihot esculentaBrachypodium distachyon46.8194.7486.67360forward
CNT30101006Manihot esculentaOryza rufipogon49.0254.1783.55377forward
CNT30724029Manihot esculentaLupinus angustifolius99.2270.8485.85763forward
CNT3050518Manihot esculentaCucumis sativus44.3454.9185.04341forward

Expression of CNT30381152

Peptides detected in this lncRNA

>peptide 1 (95 aa)
GSRLGDLGSTWVLLIDTLDHTNSNSLAHVPHSKTPQWRILGESLHNHGLCWNHLHETSITIFQKLWFLLKLLARSAINLGQDLSKLDSNVRGVAI*

>peptide 2 (89 aa)
AADLVTLAPLGSFLSTLLITPTATVWRMSLTAKRPSGGYWEKVSTTMGFVGIIFTKPASPFFKNFGSFSSSLPDRRSILVKISANLTAM*

>peptide 3 (51 aa)
MMMTCDVKLAASLAGSSLEFDATNPLLRSFTATFFTLNPTLSPGRASWRAS*

Sequence

>CNT30381152
GGCAGCAGACTTGGTGACCTTGGCTCCACTTGGGTCCTTCTTATCGACACTCTTGATCACACCAACAGCAACAGTCTGGCGCATGTCCCTCACAGCAAAA
CGCCCCAGTGGAGGATACTGGGAGAAAGTCTCCACAACCATGGGCTTTGTTGGAATCATCTTCACGAAACCAGCATCACCATTTTTCAAAAACTTTGGTT
CCTTCTCAAGCTCCTTGCCAGATCGGCGATCAATCTTGGTCAAGATCTCAGCAAACTTGACAGCAATGTGAGAGGTGTGGCAATCTAGCACTGGAGCATA
ACCATTTCCAATCTGACCAGGATGGTTCATGATGATGACCTGTGATGTGAAGTTGGCAGCCTCCTTGGCAGGATCATCCTTAGAATTTGATGCCACGAAT
CCTCTCTTGAGATCCTTCACAGCAACGTTCTTCACATTGAACCCAACATTATCACCAGGGAGGGCTTCCTGGAGAGCCTCATGATGCATCTCTACAGACT
TGACTTCAGTTGTCAGTCCAGTGGGTCCAAAAGTCACAACCATACCAGGCTTGTCTGAGGGCCTCTTGGGCTCCTGAATCTGGTCCAAAGCTTCAAGAAG
AGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTATCACCCTCGAACCCAGAGATGGGCACAAAAGGAATCTTGTCAGGGTTGTAG
CCAACCTTCTTGAGATATGAGGAGACCTCCTTGACAATTTCGTCGTACCTGGCCTTGGAGTACTTAGGG