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Detailed information on CNT30224723


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 6e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698284Hordeum vulgareQuercus lobata16.3839.8692.11114forward
CNT30712080Hordeum vulgareGlycine max48.9947.183.28341forward
CNT30590460Hordeum vulgareMusa acuminata29.653.6585.44206forward
CNT30440628Hordeum vulgareAegilops tauschii70.2666.6296.11489forward
CNT30176122Hordeum vulgareVigna angularis46.4128.5384.21323forward

Expression of CNT30224723

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGLVGIIFTIPASPFLRNLGSASSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 2 (54 aa)
MTANKILQLDSAYFFLMAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

Sequence

>CNT30224723
TCTGTAAATAAAAAACAGATAGACAGAAACATGCAACCATTTGGCAAAAGCAGCAGAAAAACAAGTGCAATCTAATAACTTGCATTTCACAACAAATCAG
TCTCAGGGCACAGGAGTTTAGCAGAAGCAGGAATAGAAATACAGTAATTAAACGACAGACAGATCATTGCTCGCCCGGGATAAGAGTCTGAAGCAACAAA
AGCAATGACCGCGAACAAAATCCTTCAGCTAGATAGCGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTCTTCTCCACG
CCCTTGATGACACCGACAGCAACCGTTTGTCTCATGTCACGCACGGCAAAACGGCCAAGAGGAGGGTAGGTGGCAAAGGTCTCCACAACCATGGGCTTGG
TGGGAATCATCTTCACGATACCAGCATCACCGTTCTTGAGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGCCTGTCGATCTTGGTCACCAGCTC
AGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCATTGCCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTA
CCAGTAATCATGTTCTTGATGAAGTCACGGTGACCAGGGGCATCAATGACGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCA