CANTATAdb - search

Detailed information on CNT30557505

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30670509	Panicum hallii	Setaria viridis	8.6	22.06	85.33	75	forward
CNT30227205	Panicum hallii	Hordeum vulgare	6.19	20.77	88.89	54	forward
CNT30437501	Panicum hallii	Aegilops tauschii	13.07	31.06	81.58	114	forward
CNT30579988	Panicum hallii	Echinochloa crusgalli	7.45	20.25	86.15	65	forward

Expression of CNT30557505

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KKDRSKMTRALGLSEPGVIMLVLRSVPSRRTLWSLSDL*

>peptide 2 (46 aa)
MLERRLPMVPVDSSEARMPLPGVARHLAVLISSSADAWRKHKNGVY*

>peptide 3 (70 aa)
QEGSEQDDTCLGAVGAGGDHVGLEERALEEDLVVVERLVDGGEDALGGGGAGPRTASRRRSSGTGSPRRG*

Sequence

>CNT30557505
GCAAGAAGGATCGGAGCAAGATGACACGTGCCTTGGGGCTGTCGGAGCCGGGGGTGATCATGTTGGTCTTGAGGAGCGTGCCCTCGAGGAGGACCTTGTG
GTCGTTGAGCGACTTGTAGACGGCGGCGAGGACGCGCTCGGTGGCGGCGGCGCAGGTCCACGAACGGCTTCCCGTCGGAGGTCTTCTGGTACAGGGTCTC
CTCGAAGAGGATGACCCCGGAGAGGTAGTCGAACACGCCGGGCGCCGTGAAGAGCAGCTCGCGGAGCGCCTGTCGGTTGGACTCCACGTTCTCGAGGTTG
ATGCTGGAGAGGCGCTTGCCGATGGTGCCCGTCGACTCGTCGGAGGCCAGGATGCCCTTGCCCGGCGTCGCGAGGCACTTGGCGGTCTTGATCAGCTCAT
CTGCAGACGCGTGGCGTAAGCACAAGAACGGTGTGTATTAAGCATACCACTAATTAGCTGCTAGTACAAACTATCATTTCCTCCATTACTCGATTGTCTT
TAGAGTTTCTTTTTGAAAATCAACGTTTATTTGACTGTAAACCAGCTAGGTCAAAGATGGAAATGGAACTTCTTTCAACTCAAAATTTTATTTAAACACA
AGAGTTCAACATGAATTTCGGTAAACGTGTCTTCCTCAGAAACAGCTCAATTTTGTGAAAAACCCAAGTGTAGCGCCCACTACACTGCATGCTACATGCT
GCTTAGCAAATTTGAAATTACTTTGCAATTGCACTACTAGCTAGAACTGCACACAAAAAATATTTAAAAATAAATACTGAAAAGTGTACTGTGAGGTAGA
TGTACATCAACAACTTGCAGCTTTGCAAGGGCATGAAAAAGCAGACTCAGATATAGAGCATCAAGAACCTGA