Detailed information on CNT30616633


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7GDU7|REPA_ORYSJ, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548101Sesamum indicumIpomoea triloba27.3436.0481.98111forward
CNT30711290Sesamum indicumGlycine max23.897.3782.4797forward
CNT30567368Sesamum indicumActinidia chinensis24.6317.4886100forward
CNT3017024Sesamum indicumZea mays14.5329.3589.8359forward
CNT30357259Sesamum indicumLactuca sativa24.8810.2682.18101forward

Expression of CNT30616633

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GDQSYNRAGASVNVANWILVRAATGMVVTAGGSLEWAAAPLKALSVVLKDAATGVAFRA*

>peptide 2 (33 aa)
MLQTGYSCGQQLEWSSQQVAPSSGQQPHSRHSP*

>peptide 3 (70 aa)
RRSVIQSSRCQRKCCKLDTRAGSNWNGRHSRWLPRVGSSPTQGTLRSTQRCSNRCRFQGMSSNHRKQRAV*

Sequence

>CNT30616633
CGGAGATCAGTCATACAATCGAGCAGGTGCCAGCGTAAATGTTGCAAACTGGATACTCGTGCGGGCAGCAACTGGAATGGTCGTCACAGCAGGTGGCTCC
CTCGAGTGGGCAGCAGCCCCACTCAAGGCACTCTCCGTAGTACTCAAAGATGCAGCAACAGGTGTCGCTTTCAGGGCATGAGTAGTAATCATCGCAAACA
GAGGGCGGTTTGACTGGAGAAGGAGGAGATGGGCCGGGAGGGCTCGACTGCAATTCCACATAGGCCGGTTTTGGATTTAATGTTCCGCTGCATTCTCACG
TAGCCCTTCTCACCCCAGCTTGCGCCCCATGAGTTCCTGACGATCCAATAATCGACACCATTTTCGCTACCATATCCCACGACATTCACACCGTGGTCCA
AGTCCA