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Detailed information on CNT30499286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677986Digitaria exilisSetaria viridis17.8623.9698.6775forward
CNT30514313Digitaria exilisJuglans regia18.8121.1292.4179forward
CNT30243105Digitaria exilisAvena sativa20.4814.895.3586forward
CNT30449388Digitaria exilisSaccharum spontaneum20.7116.9397.787forward
CNT30136282Digitaria exilisLolium perenne20.4815.5891.8686forward
CNT3013205Digitaria exilisZea mays22.3810.3894.6894forward
CNT30605418Digitaria exilisGossypium raimondii19.5228.9889.0282forward
CNT30126894Digitaria exilisCorymbia citriodora18.3321.3392.2177forward
CNT30341799Digitaria exilisEragrostis tef26.1924.3495.45110forward
CNT30580802Digitaria exilisEchinochloa crusgalli28.3325.2194.12119forward
CNT30593653Digitaria exilisEragrostis curvula26.1924.0795.45110forward
CNT30556718Digitaria exilisPanicum hallii26.672596.43112forward
CNT30551345Digitaria exilisOryza brachyantha201594.0584forward
CNT30115231Digitaria exilisEutrema salsugineum18.5721.1489.7478forward

Expression of CNT30499286

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PFGSLYRNAARASRRRSNLNPVFSSRPVLRPRG*

>peptide 2 (46 aa)
HLALYIETPREPRAAAAISILSSPAARSSVREVESESRRRASTPPR*

Sequence

>CNT30499286
CCATTTGGCTCTCTATATAGAAACGCCGCGAGAGCCTCGCGCCGCCGCAGCAATCTCAATCCTGTCTTCTCCAGCCGCCCGGTCCTCCGTCCGAGAGGTT
GAGAGCGAGTCGCGCCGGCGAGCGAGCACCCCGCCGCGATGAGGGCGAAGTGGAAGAAGAAGCGGATGAGGCGACTCAAGAGGAAGCGCCGAAAGATGAG
GCAGAGATCCAAGTAGACAGATTTTGGTCAGCTTTAGTTTTCTTTAGTACAAGAAGGTTGTGTAATGTAACTGAAATCATTTCAATCAGTGACGGCCCGT
GATTTGTAATGAATACCATGATCATCTAAAATTCTGAGTACTGTTCCCAAATTCAGAGAATAATCATAAATGGCTTTTTTGTTTTTTGGTTGGTTTCAGC
AATTCATTAATGATTTCTTG