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Detailed information on CNT30677986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500340Setaria viridisCoffea canephora21.735.8494.1268forward
CNT30187809Setaria viridisSecale cereale21.4110.6295.5267forward
CNT30223926Setaria viridisHordeum vulgare21.4110.8895.5267forward
CNT30442977Setaria viridisAegilops tauschii21.4114.2994.0367forward
CNT30244088Setaria viridisAvena sativa21.4112.6798.5167forward
CNT30449388Setaria viridisSaccharum spontaneum21.4113.0410067forward
CNT30132841Setaria viridisLolium perenne21.4112.8897.0167forward
CNT3013205Setaria viridisZea mays23.648.1795.9574forward
CNT30219095Setaria viridisKalanchoe fedtschenkoi21.733.5495.5968reverse complement
CNT30127630Setaria viridisCorymbia citriodora21.4114.9994.0367forward
CNT30716113Setaria viridisMalus domestica golden21.4111.6595.5267forward
CNT30625768Setaria viridisDaucus carota22.0412.0294.269forward
CNT30722036Setaria viridisTriticum spelta21.4115.5895.5267forward
CNT30341799Setaria viridisEragrostis tef22.3615.4998.5770forward
CNT30363122Setaria viridisSorghum bicolor23.3218.6798.6373reverse complement
CNT30359324Setaria viridisLactuca sativa22.6811.9191.5571forward
CNT3057178Setaria viridisAmborella trichopoda22.3612.1397.1470reverse complement
CNT30326905Setaria viridisAsparagus officinalis21.4115.2695.5267forward
CNT30581427Setaria viridisEchinochloa crusgalli24.2818.2798.6876forward
CNT30499286Setaria viridisDigitaria exilis23.9617.8698.6775forward
CNT30593653Setaria viridisEragrostis curvula22.3615.3298.5770forward
CNT30556718Setaria viridisPanicum hallii85.6259.8286.94268forward
CNT30551345Setaria viridisOryza brachyantha20.1311.2598.4163forward
CNT30723374Setaria viridisLupinus angustifolius21.417.5995.5267forward
CNT3063959Setaria viridisSelaginella moellendorffii21.4110.5792.5467forward
CNT3050068Setaria viridisCucumis sativus21.4116.2691.0467reverse complement

Expression of CNT30677986

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QLEEVEYAVFSVWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30677986
AGCAGCTTGAGGAAGTAGAATATGCCGTGTTCTCTGTGTGGAAGAAGAAGCGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAA
GTAGACAGATTTGCCTCGTCCGTGCTCGGGATTGTGCAGTTCGGTTGCACTTTACTGATCAATTCTAGTCTTCTTATTATAAAGGGTTGTGTCTCTGAAA
CCATTGGTGACTAGTGCGTGTCTGTTTTGTAATGAATACAATGTTCATCTGAAATTCTGAATATGGTTCCGCAACATTTTTCAGAGAATAATCTTCCCAG
GACGTGTTTATTA