Detailed information on CNT30623083


BLAST search results

BLAST vs Swiss-Prot:
sp|P92919|CB23_APIGR, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007398, E-value = 4e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Daucus carotaArabidopsis thaliana64.3663.9980.6670forward
CNT30269327Daucus carotaChenopodium quinoa45.1553.7184.26470forward
CNT30380511Daucus carotaManihot esculenta33.4349.4387.36348forward
CNT30538977Daucus carotaBrassica napus56.270.7481.37585forward
CNT30235793Daucus carotaBrassica oleracea37.0866.6784.46386forward
CNT30310534Daucus carotaCamelina sativa63.8856.1781.35665forward
CNT3078262Daucus carotaBrassica juncea51.377.6282.77534forward

Expression of CNT30623083

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRMELLAQPCLQKKEKKEPLLRQPFGSNRKI*

>peptide 2 (37 aa)
METLPLPKSSDEDGATCTALPAKEGEERAIVEAAIWE*

>peptide 3 (38 aa)
MLQGLQQGLMGRNFLRGKGGQQPHLVALLQHGIPQQHP*

>peptide 4 (43 aa)
TIICINNCMGKKDMKTQYSDRHMYNTKFHNHIRDQTNLHHNTN*

>peptide 5 (82 aa)
MFSRSHFPGTKFVAKAHALLFTGSAKWSARFSNGPFPVTMAWTKNPNMENMASLPFLSSFTLSSANASGSSARPNGSKLPPG*

Sequence

>CNT30623083
ACCATAATTTGTATCAATAATTGTATGGGAAAGAAGGATATGAAAACTCAATACTCTGACAGACACATGTATAACACAAAATTTCATAATCACATCAGAG
ATCAAACCAATTTACATCACAATACAAATTAGAAGAATTGAATGTTTTCGCGCTCTCACTTTCCAGGGACGAAGTTTGTTGCAAAGGCCCATGCATTGTT
GTTTACAGGGTCTGCCAAGTGGTCAGCCAGGTTCTCCAATGGACCCTTTCCTGTGACAATGGCCTGGACAAAGAATCCGAACATGGAGAACATGGCTAGT
CTTCCATTCTTGAGCTCCTTCACCTTAAGTTCAGCAAATGCTTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAACTTCCTCCGGGGTAAAGGGGGTCAA
CAACCTCACCTAGTGGCCCTCCTGCAACACGGTATCCCTCAACAGCACCCATGAGAATTACCTGGGTAGCCCAGATGGCCAAGATGCTTTGTGCATGGAC
CAAGCTTGGGTTGCCCAAGTAGTCAAGTCCGCCCTCGCTGAAGATTTGTGAGCCAGCCTTGAACCAGACAGCTTCGCCAAACTTGACACCATTTCGGGCC
AAGAGCTCAGGGAAAACACAGCCAAGTGCTCCAAGCATAGCCCATCTGGAGTGGATCACTTCAAGCTCACGGTTCTTGGCAAAGGTCTCGGGATCCGCGG
AGAGTCCAGCAGTGTCCCAGCCATAGTCACCAGGGAATTCACCAGTCAGGTAAGATGGAGCCTCACCAGAGAATGGGCCCAAGTACTTGACTCTGTCTGG
GCCGTACCATGGGCTGTCTGAGACAGTGACTTTCTTGACAGTCTTCCTCATGGAAACTCTTCCATTGCCAAAGAGCTCAGATGAGGATGGAGCTACTTGC
ACAGCCTTGCCTGCAAAAGAAGGAGAAGAAAGAGCCATTGTTGAGGCAGCCATTTGGGAGTAACAGAAAGATATGATGATAGTTGTTGTAAGTGTTAGTA
ATGTAAGAAGATGAAACTTAAGGCAGTTATTTATATTAGCT