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Detailed information on CNT30235067


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 6e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269200Brassica oleraceaChenopodium quinoa38.3136.5182.35272forward
CNT30124683Brassica oleraceaPhyscomitrium patens27.0433.4584.38192forward
CNT30538977Brassica oleraceaBrassica napus65.6356.3595.71466forward
CNT3060679Brassica oleraceaArabidopsis lyrata36.6243.3391.54260forward
CNT3078262Brassica oleraceaBrassica juncea61.4163.3794.04436forward
CNT30611567Brassica oleraceaArabis alpina27.3250.1385.57194forward
CNT30609649Brassica oleraceaGossypium raimondii62.8258.9281.61446forward

Expression of CNT30235067

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVTRPVPKTSEAPGESFTAFPAKAGEDRAMVEAAIRNFLDLF*

>peptide 2 (76 aa)
DDSLNEESKHREHSQPSVLDLLHLQLRESFWVGSKTQRVKAASWVEQVLCFPQWSFSGDSVTFNSSHEDHLSSPNG*

Sequence

>CNT30235067
GTGACGATAGCCTGAACGAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAAGCTTCTGGGTCGG
CAGCAAGACCCAACGGGTCAAAGCTGCCTCCTGGGTAGAGCAAGTCCTCTGCTTCCCCCAATGGTCCTTCTCCGGCGACTCTGTAACCTTCAACAGCTCC
CATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGTGCGTGGACCAAGCTCGGGTTTCCCAAGTAGTCGAGCCCTCCTTCGCTGAAGATCTGT
GAACCAGCCTTGAACCAAACAGCTTCTCCGAACTTCACTCCGTTCCTAGCCAAAAGTTCAGGGAAAACACAGCCTAGGGCTCCAAGCATGGCCCATCTGC
AGTGGATAACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTAGCTTGGGGGCTCTCCGGAGAATGGACCCAAGTA
CTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCGGTGGGTTTGACGGTTTTTCTCATGGTGACACGGCCGGTTCCAAAGACCTCTGAGGCT
CCCGGTGAGAGCTTCACGGCCTTTCCGGCAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAAATTTTCTTGATCTTTTTTAGTTTTTGT
GTTTTTTTTT