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Detailed information on CNT3078262


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 2e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538977Brassica junceaBrassica napus77.4764.4594.56533forward
CNT30235067Brassica junceaBrassica oleracea63.3761.4194.04436forward
CNT30173249Brassica junceaTrifolium pratense68.3149.5880.85470forward
CNT30145117Brassica junceaMedicago truncatula68.0250.8783.33468forward
CNT30310534Brassica junceaCamelina sativa76.4544.4391.83526forward
CNT30609649Brassica junceaGossypium raimondii73.9867.2481.93509forward
CNT30217700Brassica junceaKalanchoe fedtschenkoi38.2333.3384.03263forward
CNT30714756Brassica junceaMalus domestica golden77.6252.6182.58534forward
CNT30623083Brassica junceaDaucus carota77.6251.382.77534forward
CNT30119285Brassica junceaCitrus clementina77.7659.8482.43535forward
CNT30725370Brassica junceaLupinus angustifolius67.4443.8682.33464forward

Expression of CNT3078262

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGQSCLLGKASPLLLPTVPLQRLCNPQQLP*

>peptide 2 (88 aa)
MVGEILQRSLSGDNSLNKESKHREHSQPSVLDLLHLQLGESFWVGSKAQWVKAASWVKQVLCFSQRSLSSDSVTLNSSHEDNLSGPNG*

>peptide 3 (42 aa)
MAHLQWITSSSRFLAKAGEDRAMVEAAIRTFLLILCFFFLVTG

Sequence

>CNT3078262
TTTACATAGGAAAGATCACAAACAAACTCTCTTTCTCCGGCTCTCACTCACATTACAATAAGCTTTAACTCGCTCACTTTCCGGGGACGAAGTTGGTGGC
GAAGGCCCATGCGTTGTTGTTGACTGGGTCAGCCAAATGGTCGGCGAGATTCTCCAACGGTCCCTTTCCGGTGACAATAGCCTGAACAAAGAATCCAAAC
ATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAAAGCTTCTGGGTCGGTAGCAAGGCCCAATGGGTCAAAGCTGCCTC
CTGGGTAAAGCAAGTCCTCTGCTTCTCCCAACGGTCCCTCTCCAGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATAACCTGAGTGGCCCAAATGGC
TAAGATGCTCTGAGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCAAGTCCTCCTTCGCTGAAGATCTGTGAACCGGCCTTGAACCAGACAGCTTCTCCG
AACTTGACTCCGTTACGAGCCAAGAGCTCAGGGAAAACACAGCCTAGGGCTCCGAGCATGGCCCATCTGCAGTGGATAACTTCTAGCTCACGGTTCCTGG
CGAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAACTTTTTTGTTGATTTTATGTTTTTTTTTTTTGGTGACTGGTGA