Detailed information on CNT30522251


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696045Setaria italicaOryza sativa75.8153.1689.36564forward
CNT30394291Setaria italicaTriticum turgidum68.0161.6392.29506forward
CNT30556097Setaria italicaOryza glaberrima83.0663.7890.78618forward
CNT30440221Setaria italicaAegilops tauschii41.1398.3988.24306forward
CNT3011335Setaria italicaZea mays76.6155.8388.6570forward
CNT30685368Setaria italicaTriticum urartu77.2860.4688.52575forward
CNT30369254Setaria italicaOryza glumipatula76.6155.2388.07570forward
CNT30103296Setaria italicaOryza rufipogon76.6161.5689.3570forward
CNT30579007Setaria italicaEchinochloa crusgalli83.673.9694.53622forward
CNT30498674Setaria italicaDigitaria exilis41.845.9494.86311forward
CNT30116851Setaria italicaOryza nivara80.6568.5790.17600forward

Expression of CNT30522251

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

>peptide 2 (73 aa)
SGTSRQLLAGLVWSDLKSSRAQSNTLARATTTRLLTSRGHITCRGRSWWRTPMRCWRRGRRRGRRGSRWVPCR*

>peptide 3 (56 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPGGPPPTR*

Sequence

>CNT30522251
TCGGGCACGTCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCC
TACTCACGAGCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTC
TCGATGGGTCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGG
CGGCGGTGTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGAC
CTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTG
AACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCT
CCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGT
CTGCTCCGAGAACGGGCCCAGGTACTTGGGGCGGTCAGGGCCGT