« Back to Aegilops tauschii search


Detailed information on CNT30440221


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522251Aegilops tauschiiSetaria italica98.3941.1388.24306forward
CNT30188104Aegilops tauschiiSecale cereale59.1626.8296.74184forward
CNT30223925Aegilops tauschiiHordeum vulgare55.6331.8694.8173forward
CNT30393827Aegilops tauschiiTriticum turgidum100.3234.4494.87312forward
CNT30665546Aegilops tauschiiTriticum dicoccoides100.6449.1493.61313forward
CNT30142779Aegilops tauschiiLolium perenne60.1321.0890.37187forward
CNT30685738Aegilops tauschiiTriticum urartu100.3237.2894.55312forward
CNT30575574Aegilops tauschiiOryza barthii97.7533.4888.49304forward
CNT30579233Aegilops tauschiiEchinochloa crusgalli99.0445.6389.29308forward

Expression of CNT30440221

Peptides detected in this lncRNA

>peptide 1 (62 aa)
KAHALLLTGSATWSKRFSTGPFPVTMACTKKPNMENMARRPFLSSLTLSSAAVSGSSARPSG*

>peptide 2 (76 aa)
EGPRVVVDRVGDVVEEVLNGPLSGDDGLHEEAEHGEHGEAAVLELLDLELSCGVGVVGEAKWMMSRPSPRGPPPTR*

Sequence

>CNT30440221
CGAAGGCCCACGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGCCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAA
CATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCTGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGATGATGTCGAGGC
CCTCGCCGAGGGGGCCGCCACCAACGCGGTAACCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAG
GTTGGGGTTGC