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Detailed information on CNT30394291


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696045Triticum turgidumOryza sativa61.6347.6988.14506forward
CNT30522251Triticum turgidumSetaria italica61.6368.0192.29506forward
CNT30453153Triticum turgidumSaccharum spontaneum46.2947.9285.79380forward
CNT30575574Triticum turgidumOryza barthii5751.5489.53468forward

Expression of CNT30394291

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPYTRAPCQLMILSDDTRFFRPFPRAHLVLN*

>peptide 2 (71 aa)
MTHDSSVHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHNVQVHMHISSDGRTDGRMAKHI*

>peptide 3 (49 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPGGPPPTR*

>peptide 4 (39 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADS

Sequence

>CNT30394291
CCTGTAGCCTCGTGCTTGTCATCTTCTCTATTGTAGTGCATATATGCCGTATACGCGCGCGCCATGCCAGTTGATGATCTTGAGTGATGACACACGATTC
TTCCGTCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCACAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAAC
ACACAAAGTACGTGCAGCTACACGTTGATCCACAACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGATGGCTAAACACATTT
AGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTGAC
GATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCG
AGGCCAAGTGGGTCGAAGGCGCCGCCGGGGGGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGA
TGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTT
GATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAG
GTCTCTGGGTCAGCCGACAGC