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Detailed information on CNT30369254


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 2e-139

BLAST vs NONCODE:
NONBNAT007398, E-value = 3e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522251Oryza glumipatulaSetaria italica55.2376.6188.07570forward
CNT30186790Oryza glumipatulaSecale cereale42.2546.3891.06436forward
CNT30251851Oryza glumipatulaAvena sativa41.4743.989.25428forward
CNT30656190Oryza glumipatulaTriticum dicoccoides54.7534.6887.96565forward
CNT3011335Oryza glumipatulaZea mays55.4356.0293.88572forward
CNT30685008Oryza glumipatulaTriticum urartu42.8345.9590.95442forward
CNT30103296Oryza glumipatulaOryza rufipogon55.4361.7794.41572forward
CNT30575045Oryza glumipatulaOryza barthii57.2762.6197.12591forward

Expression of CNT30369254

Peptides detected in this lncRNA

>peptide 1 (86 aa)
DFPGTNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 2 (78 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPSGSKLPPGGPPAMRYPSTAPMSTTWQPQIARMLCAWIRLGLPR*

>peptide 3 (31 aa)
MVDAAIDASLGLGGDGHRCFWNVCLLSSSAAV

>peptide 4 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30369254
CTGATTTCCCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCT
GAACGAACGAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGC
CGGAGATCCACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCCAGGTGGTCGGCCAGGTTCTCCAGTGG
CCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCC
TCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACAACCTGGCAAC
CCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACAC
GGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCC
CGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGCGC
CGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGC
CTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAAT
GTGTGTCTTTTGAGCTCGTCAGCTGCTGTGGT