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Detailed information on CNT30103296


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 4e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522251Oryza rufipogonSetaria italica61.5676.6189.3570forward
CNT3011335Oryza rufipogonZea mays75.5968.5692.14700forward
CNT30369254Oryza rufipogonOryza glumipatula61.7755.4394.41572forward

Expression of CNT30103296

Peptides detected in this lncRNA

>peptide 1 (33 aa)
YTTPTRSSSRRTKPIFPNPKTTNSLATNPSNHN*

>peptide 2 (36 aa)
TQHQLDHHLVALNPSSPTQRQRTRWPQIHPTTINHC*

>peptide 3 (78 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPGGPPAMRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 4 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30103296
GTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAAT
TAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGG
CGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTT
GAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATG
AGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGC
CCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTG
GATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAG
CTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCT
TGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCAT
TGATGCAGTGAGCTGTGAGAGCTGAG