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Detailed information on CNT30685368


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696045Triticum urartuOryza sativa59.253.0685.61563forward
CNT30522251Triticum urartuSetaria italica60.4677.2888.52575forward
CNT30393827Triticum urartuTriticum turgidum85.1789.499.75810forward
CNT30556099Triticum urartuOryza glaberrima60.1558.6787.41572forward
CNT30664531Triticum urartuTriticum dicoccoides69.8296.3796.54664forward
CNT30575846Triticum urartuOryza barthii60.1564.7187.41572forward
CNT30116728Triticum urartuOryza nivara58.9963.4687.17561forward

Expression of CNT30685368

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 2 (36 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSAPPG*

>peptide 3 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30685368
TGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCG
CTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGAC
GGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGG
TTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCT
CGGCGGCGGTGTCGGGGTCGTCGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCAT
GAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCG
CCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGT
GGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTA
CGACGGGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCT
CAGTGAGATGAACTGGTGGATGGTGTGTTAGCCTATAAATTATGATTTATT