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Detailed information on CNT3021028


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 0.0

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Citrullus lanatusOryza sativa67.5553.2783.79839forward
CNT30677701Citrullus lanatusSetaria viridis55.23100.1584.69686forward
CNT30521187Citrullus lanatusSetaria italica66.3463.2483.86824forward
CNT30546799Citrullus lanatusIpomoea triloba66.4367.1883.88825forward
CNT30518094Citrullus lanatusJuglans regia67.7989.9683.49842forward
CNT30194937Citrullus lanatusPisum sativum67.8784.3883.04843forward
CNT30712097Citrullus lanatusGlycine max34.2235.6286.59425forward
CNT30588666Citrullus lanatusMusa acuminata26.4967.782.98329forward
CNT30440878Citrullus lanatusAegilops tauschii19.7331.1788.16245forward
CNT30665783Citrullus lanatusTriticum dicoccoides38.8152.9184.85482forward
CNT3059230Citrullus lanatusArabidopsis lyrata64.9867.1484.26807forward
CNT3078925Citrullus lanatusBrassica juncea66.3470.3783.86824forward
CNT30449495Citrullus lanatusSaccharum spontaneum63.5364.8383.14789forward
CNT30132437Citrullus lanatusLolium perenne64.4166.5680.88800forward
CNT3011166Citrullus lanatusZea mays66.3458.2783.37824forward
CNT30647369Citrullus lanatusRosa chinensis23.2731.989.27289forward
CNT30203418Citrullus lanatusHelianthus annuus17.0751.8387.26212forward
CNT30624959Citrullus lanatusDaucus carota27.2999.7183.48339forward
CNT30685098Citrullus lanatusTriticum urartu38.8132.7984.85482forward
CNT30427756Citrullus lanatusPapaver somniferum67.2364.0384.43835forward
CNT30644454Citrullus lanatusCannabis sativa13.8583.0990.12172forward
CNT30116111Citrullus lanatusOryza nivara21.931.0986.76272forward
CNT30603788Citrullus lanatusOryza punctata69.4873.2683.89863forward
CNT30724026Citrullus lanatusLupinus angustifolius68.659.1784.39852forward
CNT3050294Citrullus lanatusCucumis sativus42.7586.6293.03531forward

Expression of CNT3021028

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSLTANRPSGGYSENVSTTMGLVGIILTNPASPFFKNLGSFSSSLPDRLSILVKISANLTAM*

>peptide 2 (54 aa)
MVHLNRLYFSSQSSWGKGDNHTGLYNTSFHTTHWNSSNTSNLVDILKWKTKGFV*

>peptide 3 (37 aa)
MTKVIDTKGLNNVLKQKRSIMKETETKVNTIIKSSLK*

Sequence

>CNT3021028
TTGAAGAGAAATGACCAAAGTAATAGACACAAAGGGGCTTAATAATGTACTCAAACAAAAACGATCCATCATGAAAGAAACAGAAACGAAAGTCAATACC
ATAATAAAAAGTAGCTTAAAATAAAACACGCATAAAACATACAATAATCTTCAAAGTTTTTAAAAGGAAGACTTGCCACCGCCGATCAAGCACCCAATTC
TGAGAGAAGCTGCTCAGCGACGATGGAGGAAACTTGAAGACGTGACCAATGAGACAGACACAAAACAAACCCCAAGCAGATATTAATTCAACAACAACCC
AGTCATCATTGTGACTAACATCAAGCCGTTCGGCTTTACTACCGCCAACGGCTACTCGTACCATTCACTTCCCTGATTTCTTAGCTGCAGACTTGGTGAC
TTTAGCGCCGGATGGGTCCTTCTTCTCGACGGCCTTGATGACACCAACAGCCACAGTTTGACGCATGTCCCTCACGGCAAATCGTCCAAGTGGAGGATAC
TCGGAGAATGTTTCCACCACCATGGGCTTGGTGGGGATCATCTTAACAAATCCAGCATCTCCGTTTTTCAAGAACTTGGGCTCTTTCTCGAGTTCTTTAC
CAGATCGCCTGTCAATCTTGGTTAAAATCTCGGCAAATTTGACTGCAATGTGAGAGGTGTGGCAGTCGAGGACAGGAGCATAGCCATTTCCAATCTGCCC
TGGATGGTTCATGATAATAACTTGGGAAGTGAAATTGGCAGCTTCCTTAGCAGGGTCATCCTTGGAATTTGAGGCAACGTAACCACGCTTGAGATCCTTC
ACAGCAACATTCTTCACGTTGAACCCCACATTATCACCAGGGAGAGCTTCTTGGAGAGCTTCATGGTGCATCTCAACAGACTTTACTTCAGTAGTCAGTC
CAGTTGGGGCAAAGGTGACAACCATACCGGGCTTTATAATACCAGTTTCCACACGACCCACTGGAACAGTTCCAATACCTCCAATCTTGTAGACATCCTG
AAGTGGAAGACGAAGGGGTTTGTCTGATGGTCTCTTAGGCTCTTGGATCAGGTCAAGGGCCTCAAGAAGAGTTGGTCCCTTGTACCAGTCGAGGTTTGTG
GATCTTTCAATCATGTTGTCACCCTCAAATCCAGAGATGGGGACGAAGGGAATTTTGTCTGGGTTGTAGCCAACCTTCTTGAGGTAGGATGAAACTTCCT
TGACGATTTCATCGTACCTAGACCTAGAGTATTTGGGAGTCG