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Detailed information on CNT30440472


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Aegilops tauschiiOryza sativa55.6321.0292.75331forward
CNT30678319Aegilops tauschiiSetaria viridis55.2953.5892.4329forward
CNT30521187Aegilops tauschiiSetaria italica55.6325.493.05331forward
CNT30639730Aegilops tauschiiNymphaea colorata55.4635.9185.45330forward
CNT30535563Aegilops tauschiiEucalyptus grandis55.2940.3286.93329forward
CNT30316757Aegilops tauschiiCorylus avellana55.4627.5588.79330forward
CNT30546678Aegilops tauschiiIpomoea triloba54.2924.0187.62323forward
CNT30518094Aegilops tauschiiJuglans regia55.4635.2687.88330forward
CNT30371709Aegilops tauschiiArabidopsis thaliana55.851.5586.14332forward
CNT30618377Aegilops tauschiiSesamum indicum43.8769.9787.36261forward
CNT30274113Aegilops tauschiiChenopodium quinoa38.9937.1885.78232forward
CNT3020462Aegilops tauschiiCitrullus lanatus55.4629.4686.36330forward
CNT30727585Aegilops tauschiiCorchorus capsularis55.2924.4186.63329forward
CNT30194937Aegilops tauschiiPisum sativum52.2731.1387.14311forward
CNT30712097Aegilops tauschiiGlycine max54.4527.1685.49324forward
CNT30160100Aegilops tauschiiPistacia vera55.4634.8586.67330forward
CNT30564256Aegilops tauschiiActinidia chinensis51.2626.288.2305forward
CNT30540422Aegilops tauschiiBrassica napus55.4648.2586.67330forward
CNT30233904Aegilops tauschiiBrassica oleracea55.2935.8886.63329forward
CNT30173274Aegilops tauschiiTrifolium pratense52.7723.3586.31314forward
CNT30146334Aegilops tauschiiMedicago truncatula54.9632.987.46327forward
CNT3077051Aegilops tauschiiBrassica juncea55.4628.687.27330forward
CNT30598015Aegilops tauschiiFraxinus excelsior41.8549.687.55249forward
CNT30449969Aegilops tauschiiSaccharum spontaneum55.6326.2390.63331forward
CNT3011166Aegilops tauschiiZea mays55.2923.2791.19329forward
CNT30608730Aegilops tauschiiGossypium raimondii41.8541.586.75249forward
CNT30203420Aegilops tauschiiHelianthus annuus32.6138.6587.63194forward
CNT30127375Aegilops tauschiiCorymbia citriodora49.5852.8786.78295forward
CNT30368495Aegilops tauschiiSorghum bicolor55.6332.4891.24331forward
CNT30482488Aegilops tauschiiChara braunii36.1334.982.79215forward
CNT30426682Aegilops tauschiiPapaver somniferum54.9624.7485.93327forward
CNT3024422Aegilops tauschiiPopulus trichocarpa55.2943.1285.11329forward
CNT30148140Aegilops tauschiiBrachypodium distachyon53.4583.6894.97318forward
CNT30496874Aegilops tauschiiDigitaria exilis55.6329.5392.45331forward
CNT30603788Aegilops tauschiiOryza punctata55.6328.193.35331forward

Expression of CNT30440472

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TGNHLAKAAEKQANKLQSNNLHFTTNQSQGHRSLADAGIEIQ*

>peptide 2 (42 aa)
MMMTWEVKLAASLAGSSLELDATNPRFRSFTATFLTLKPTLSP

>peptide 3 (66 aa)
MAALVTLAPVSTTMGLVGIILTIPASPFFRNLGSASSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 4 (34 aa)
KQATIWQKQQKNKLTSCNLITCISQQISLRGTGV*

Sequence

>CNT30440472
AAACAGGCAACCATTTGGCAAAAGCAGCAGAAAAACAAGCTAACAAGTTGCAATCTAATAACTTGCATTTCACAACAAATCAGTCTCAGGGGCACAGGAG
TTTAGCCGACGCAGGAATAGAAATACAGTAATTAAACGACAGACAGATCATTGCTCGCTCGGGATAAGAGTCTGAAGCAACAAAAGCAATGACCGTGAAC
AAAAACATTCTGCTAGATAGCACGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCGCCGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTT
GACGATACCAGCGTCACCGTTCTTCAGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGCCTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACA
GCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCCGCCT
CCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACAAACCCACGCTTCAGATCCTTCACAGCAACGTTCTTGACGTTGAAGCCAACGTTGTCACCA