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Detailed information on CNT3024428

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 7e-142

BLAST vs NONCODE:
NONGMAT001702, E-value = 6e-161

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691950	Populus trichocarpa	Oryza sativa	83.22	40.32	83.78	635	forward
CNT30521187	Populus trichocarpa	Setaria italica	83.22	48.73	85.83	635	forward
CNT30639730	Populus trichocarpa	Nymphaea colorata	74.18	61.59	83.39	566	forward
CNT30380230	Populus trichocarpa	Manihot esculenta	90.3	28.4	83.89	689	forward
CNT30525464	Populus trichocarpa	Phaseolus vulgaris	63.96	86.37	80.94	488	forward
CNT30712097	Populus trichocarpa	Glycine max	57.14	36.55	86.24	436	forward
CNT30160120	Populus trichocarpa	Pistacia vera	79.95	49.07	85.74	610	forward
CNT30246955	Populus trichocarpa	Avena sativa	71.82	31.05	84.12	548	forward
CNT30449969	Populus trichocarpa	Saccharum spontaneum	82.04	49.6	85.46	626	forward
CNT3011166	Populus trichocarpa	Zea mays	82.04	44.27	85.94	626	forward
CNT30647369	Populus trichocarpa	Rosa chinensis	49.15	41.39	85.07	375	forward
CNT30350898	Populus trichocarpa	Eragrostis tef	83.22	57	85.51	635	forward
CNT30368495	Populus trichocarpa	Sorghum bicolor	82.04	61.43	85.62	626	forward
CNT30706337	Populus trichocarpa	Prunus avium	82.18	53.77	86.44	627	forward
CNT30101006	Populus trichocarpa	Oryza rufipogon	46.26	50.72	85.27	353	forward
CNT30594462	Populus trichocarpa	Eragrostis curvula	83.22	54.55	85.35	635	forward
CNT30176122	Populus trichocarpa	Vigna angularis	82.04	55.3	81.31	626	forward

Expression of CNT3024428

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGFVGIILIIPASPFFRNLGSFSNSLPDRLSILVRISANLTAM*

>peptide 2 (96 aa)
MMITWEVKFAASLAGSSFEFEATKPRFRSFTATFLTLNPTLSPGRASWSASWCISTDLTSVVSPVGPKVTIVPGLMTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT3024428
AACCAATGAATAGACTAGTGACAAGAACCCACTCTTGATTTATATTATAGCATCTAGTTGCATCATCCTGCACAGTTCACTTGCCACCCTTCTTGGCAGC
AGATTTGGTCACCTTAGCACTAGAAGCATCCTTTTTCTCCACGTTCTTGATCACTCCCACAGCAACAGTCTGGCGCATATCCCTCACAGCAAAACGTCCA
AGTGGGGGATACTCTGAGAAAGTCTCCACCACCATGGGCTTCGTGGGAATCATCTTAATCATACCTGCATCACCGTTCTTCAGAAATTTAGGTTCCTTCT
CCAACTCCTTGCCGGATCGCCTGTCAATCTTGGTGAGGATCTCAGCAAATTTGACAGCAATGTGACAGGTGTGGCAGTCAAGAACTGGGGCATAACCATT
TCCAATCTGCCCAGGATGGTTCATGATGATCACCTGGGAGGTGAAGTTCGCAGCCTCCTTGGCGGGATCATCCTTCGAGTTTGAGGCAACAAAACCACGC
TTCAGATCCTTCACGGCAACATTCTTAACATTAAATCCAACATTGTCACCGGGAAGAGCCTCTTGGAGTGCTTCGTGGTGCATCTCAACAGACTTAACTT
CAGTAGTTAGTCCAGTTGGCCCGAAAGTGACAATCGTACCAGGCTTGATGACACCAGTTTCCACACGACCAACTGGGACCGTTCCAATACCACCAATCTT
GTACACGTCCTGAAGGGGGAGACGGAGGGGCTTGTCCGAGGGCCTCTTGGGCTCCTGGATCTG