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Detailed information on CNT30556099

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691986	Oryza glaberrima	Oryza sativa	18.26	59.33	100	178	forward
CNT30521859	Oryza glaberrima	Setaria italica	62.46	73.46	92.94	609	forward
CNT30187906	Oryza glaberrima	Secale cereale	44.1	53.95	90.93	430	forward
CNT30393827	Oryza glaberrima	Triticum turgidum	63.28	68.1	88.17	617	forward
CNT30589923	Oryza glaberrima	Musa acuminata	30.77	66.08	92	300	forward
CNT30245298	Oryza glaberrima	Avena sativa	43.9	50.41	85.51	428	forward
CNT30664531	Oryza glaberrima	Triticum dicoccoides	61.74	87.37	89.7	602	forward
CNT30454234	Oryza glaberrima	Saccharum spontaneum	60.92	80.27	85.19	594	forward
CNT30799	Oryza glaberrima	Zea mays	36.21	42.53	91.5	353	forward
CNT30229088	Oryza glaberrima	Ananas comosus	38.87	43.56	92.08	379	forward
CNT30685368	Oryza glaberrima	Triticum urartu	58.67	60.15	87.41	572	forward
CNT30347916	Oryza glaberrima	Eragrostis tef	18.67	30.33	95.6	182	forward
CNT30369866	Oryza glaberrima	Oryza glumipatula	42.26	56.05	99.03	412	forward
CNT30575846	Oryza glaberrima	Oryza barthii	90.67	100	99.77	884	forward
CNT30498674	Oryza glaberrima	Digitaria exilis	32.31	46.53	91.75	315	forward
CNT30603927	Oryza glaberrima	Oryza punctata	44.92	55.23	96.58	438	forward

Expression of CNT30556099

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKAPPGYTLSRPSPSGPPPTR*

>peptide 2 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

>peptide 3 (38 aa)
ATLACSRELGPAPIYWVDAQIGIVLAGFVVDPIITIHH*

Sequence

>CNT30556099
GCAACGCTGGCGTGCTCGCGTGAACTGGGTCCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAA
TAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAAT
TAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGTGCGTGG
CTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTT
GTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCG
AGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGT
AGCCCTCGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCC
CTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCC
AGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCG
GGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCCATACC