Detailed information on CNT30369818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 6e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Oryza glumipatulaSetaria italica70.0648.3290.59489forward
CNT30188155Oryza glumipatulaSecale cereale55.8755.488.21390forward
CNT30298810Oryza glumipatulaTriticum aestivum54.8781.4992.43383forward
CNT30393441Oryza glumipatulaTriticum turgidum73.7865.6991.07515forward
CNT30440443Oryza glumipatulaAegilops tauschii58.4563.4586.27408forward
CNT30684492Oryza glumipatulaTriticum urartu73.7848.3688.35515forward
CNT30498674Oryza glumipatulaDigitaria exilis53.0154.6591.35370forward

Expression of CNT30369818

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGSSARMLCACTRLGFPR*

>peptide 2 (65 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRGRRGSRWGPCR*

Sequence

>CNT30369818
GACAGAAAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGC
AGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGC
GTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAAC
ATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGGTCGTCGGCGAGGATGCTCTGCGCGTGCACCAGGT
TGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGAT
CTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGC
CCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCC