Detailed information on CNT30393441


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 9e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Triticum turgidumSetaria italica61.4847.6389.21482forward
CNT30298483Triticum turgidumTriticum aestivum78.9510099.03619forward
CNT30472624Triticum turgidumSaccharum spontaneum62.8861.0188.03493forward
CNT30129909Triticum turgidumCorymbia citriodora66.9672.2188.19525forward
CNT30684492Triticum turgidumTriticum urartu97.0771.4698.16761forward
CNT30345519Triticum turgidumEragrostis tef39.2953.189.29308forward
CNT30369818Triticum turgidumOryza glumipatula65.6973.7891.07515forward
CNT30498674Triticum turgidumDigitaria exilis47.1954.6590.81370forward

Expression of CNT30393441

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARMLCACTRLGLPR*

>peptide 2 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 3 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30393441
CTTGAAGTACCATATACGCCATGCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTAC
ATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGT
ACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTG
TTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGC
GGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTC
GAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCG
AGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCACCCGT
AGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC