CANTATAdb - search

Detailed information on CNT30187133

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 7e-99

BLAST vs NONCODE:
NONATHT001041, E-value = 6e-22

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30589923	Secale cereale	Musa acuminata	42.55	65.42	90.57	297	forward
CNT30799	Secale cereale	Zea mays	51.86	43.61	91.99	362	forward
CNT30684718	Secale cereale	Triticum urartu	96.7	98.97	94.37	675	forward
CNT30369948	Secale cereale	Oryza glumipatula	48.57	33.93	91.45	339	forward
CNT30498674	Secale cereale	Digitaria exilis	44.56	45.94	91.32	311	forward

Expression of CNT30187133

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

>peptide 2 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

Sequence

>CNT30187133
GCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCA
GCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCT
CGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGATGATGTCGAGGCCCTCACC
GAGGGGGCCGCCGCCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGG
TTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACTGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCG
GGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCGGCCGACAGCCCCGC
GGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC