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Detailed information on CNT30494492


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702712Olea europaeaQuercus lobata27.4416.4984.78138forward
CNT30727836Olea europaeaCorchorus capsularis26.0435.2284.73131forward
CNT30380904Olea europaeaManihot esculenta19.2832.5587.6397forward
CNT30708916Olea europaeaGlycine max26.2454.7783.33132forward
CNT30145300Olea europaeaMedicago truncatula26.8461.9383.7135forward
CNT30261343Olea europaeaBrassica rapa21.6720.683.49109forward
CNT30207455Olea europaeaHelianthus annuus27.4420.8883.33138forward
CNT30620107Olea europaeaCajanus cajan29.8210.7984.67150forward
CNT30570222Olea europaeaVitis vinifera27.4427.6683.33138forward
CNT30334895Olea europaeaCynara cardunculus27.4433.9184.06138forward

Expression of CNT30494492

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MAFKFNVASTSDCPPDKNCPKFNIFCYFDLCNASYSYSVFFIHIFCRIYTIYFVGSIAYKHLRI

>peptide 2 (78 aa)
MSSSTCFVVPLHMRKRLAMGWVLGSWHSSSMLPPLQIAHQTKTAQNSTFFVILTYAMLATHIQYFLSTYFVGSIPYIL*

Sequence

>CNT30494492
GTCTCTTTCTTAATTAACCAAGCATAATATATGGAATATATATTTTAATAAATATATTGTTCGACTCTCTCTAGTCGAGTAGTCAAGTCGATTTTCATCG
AAATGTTTGCAAATACACGTATAAACAAAAATAATCTTCCTTCATCTACTTCTTCATAGTTCGATAAGTTTAGTAGACATAGCCCTTAACAAACATTCCT
TTCTTTGCTTCATCAGATTCTCCGGACGCCCTCCCCATGTCTTCAAGCACGTGTTTTGTAGTGCCCTTGCATATGAGAAAGAGACTTGCCATGGGTTGGG
TGCTTGGTTCATGGCATTCAAGTTCAATGTTGCCTCCACTTCAGATTGCCCACCAGACAAAAACTGCCCAAAATTCAACATTTTTTGTTATTTTGACCTA
TGCAATGCTAGCTACTCATATTCAGTATTTTTTATCCACATATTTTGTAGGATCTATACCATATATTTTGTAGGATCTATAGCTTATAAGCACTTAAGAA
TAC