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Detailed information on CNT30380904


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 7e-47

BLAST vs NONCODE:
NONMEST001145, E-value = 9e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30494492Manihot esculentaOlea europaea32.5519.2887.6397forward

Expression of CNT30380904

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HSPSQTFLFWLPQTLPRRCIFQAAQESWLLLG*

>peptide 2 (50 aa)
MSSGKYFEGLLHRRTIRAMGWELGSLHSSSGLLPLLQEQMDRWECSPQYAF

>peptide 3 (98 aa)
IALHKHSFFGFLRLSLAGVFSKLRKRVGFCSDKQGLLSRLHILRCASPCLQASILKGSCIGERYVPWVGSLVHCIQVQGCFLYCKSRWTVGNAHHSTPF

Sequence

>CNT30380904
CATAGCCCTTCACAAACATTCCTTTTTTGGCTTCCTCAGACTCTCCCTCGCCGGTGTATTTTCCAAGCTGCGCAAGAGAGTTGGCTTTTGCTCGGATAAG
CAGGGCCTCCTGAGCCGCCTTCACATTCTCAGGTGTGCCTCCCCATGTCTTCAGGCAAGTATTTTGAAGGGCTCTTGCATAGGAGAACGATACGTGCCAT
GGGTTGGGAGCTTGGTTCATTGCATTCAAGTTCAGGGCTGCTTCCTTTACTGCAAGAGCAGATGGACCGTTGGGAATGCTCACCACAGTACGCCTTTT