Detailed information on CNT30406390


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549621Beta vulgarisIpomoea triloba31.1935.7982.44131forward
CNT30378260Beta vulgarisArabidopsis thaliana30.4827.5981.25128forward
CNT30490055Beta vulgarisOlea europaea34.7634.0387.67146forward
CNT30160060Beta vulgarisPistacia vera29.0511.7881.15122forward
CNT30564723Beta vulgarisActinidia chinensis34.768.9784.93146forward
CNT30366883Beta vulgarisSorghum bicolor27.6220.181.9116forward
CNT30102928Beta vulgarisOryza rufipogon29.5213.1682.26124forward

Expression of CNT30406390

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGFMYQACSGICLGILFVLTGSSIGGFLNPK*

>peptide 2 (33 aa)
TRTSRGQRNQLSSMPSTTNDNLHCTTESSRALW*

>peptide 3 (39 aa)
MPNHNSINASIVPKGTAPEDFSPHIRVFNTKKMPKSIPGN

>peptide 4 (70 aa)
QEQVEGRGTSCQVCPPPPMIIFTAQLKVAEHYGNFSTCDYQDDKHDEKEAKNVVELRIWASCTKPAQVFA*

Sequence

>CNT30406390
TACAAGAACAAGTAGAGGGCAGAGGAACCAGCTGTCAAGTATGCCCTCCACCACCAATGATAATCTTCACTGCACAACTGAAAGTAGCAGAGCACTATGG
TAATTTCAGCACATGTGATTATCAAGATGACAAACACGATGAAAAGGAAGCCAAAAATGTAGTAGAATTGAGAATATGGGCTTCATGTACCAAGCCTGCT
CAGGTATTTGCCTAGGGATTTTATTTGTTTTGACTGGGTCGTCCATCGGTGGCTTTTTAAATCCCAAATAACTGCCAACAAAAACCAGTGGAACTGATAT
GCCAAACCACAACAGCATCAACGCCAGCATAGTTCCAAAAGGCACAGCCCCTGAAGATTTCTCCCCCCATATCAGGGTGTTCAATACAAAGAAAATGCCA
AAGAGTATTCCAGGGAACAT