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Detailed information on CNT30449622


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00327|PSAG_HORVU, E-value = 6e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520575Saccharum spontaneumSetaria italica41.5739.3496.97264forward
CNT30512731Saccharum spontaneumJuglans regia44.5753.179.51283forward
CNT30224101Saccharum spontaneumHordeum vulgare11.528.8589.0473forward
CNT30394697Saccharum spontaneumTriticum turgidum35.5935.793.81226forward
CNT30590999Saccharum spontaneumMusa acuminata16.5435.2389.52105forward
CNT30543069Saccharum spontaneumBrassica napus18.1129.4184.35115forward
CNT30250210Saccharum spontaneumAvena sativa23.4628.0191.95149forward
CNT30666063Saccharum spontaneumTriticum dicoccoides21.2630.6893.33135forward
CNT3081347Saccharum spontaneumBrassica juncea21.121.2485.82134forward
CNT3013389Saccharum spontaneumZea mays37.3254.6198.31237forward
CNT30350071Saccharum spontaneumEragrostis tef25.5132.2194.44162forward
CNT30362701Saccharum spontaneumSorghum bicolor62.0562.7496.19394forward
CNT30330447Saccharum spontaneumDioscorea rotundata14.0231.984.2789forward
CNT30577680Saccharum spontaneumOryza barthii25.9836.2693.94165forward
CNT30581311Saccharum spontaneumEchinochloa crusgalli35.7529.0395.59227forward
CNT30114891Saccharum spontaneumEutrema salsugineum21.5750.9381.75137forward

Expression of CNT30449622

Peptides detected in this lncRNA

>peptide 1 (30 aa)
TVYQTSDLLMYVSFASHELARLALALRMTY*

>peptide 2 (33 aa)
MRHYTRAVALLVQINQSLSIRYMHVAEPNTQTE*

>peptide 3 (54 aa)
MSQSQTHKRSRIQAQEHGKPALRRSWGRIRCWRWRGCSRRRCGRASPRRGRRRG*

>peptide 4 (98 aa)
MWPSEPQARTSTRLKPTGSLDLSRAENSLARSSPASKCVLPFCSGTCFATFSRWKLKKTKRPRKSDTPVLRLITSDALSSARGARPRTAGTARRRSMWP

Sequence

>CNT30449622
TACTGTATATCAGACATCTGATCTGCTGATGTATGTGTCGTTCGCAAGTCATGAACTGGCACGACTGGCTTTGGCTTTGCGCATGACATACTGAAACAGG
GACAGTGACTGAAGAAGGCAGAGACATAGAGGAGGATCAAATTCATGCGGCACTATACACGCGCCGTTGCACTACTAGTCCAAATTAACCAATCTTTGAG
CATCAGATACATGCATGTCGCAGAGCCAAACACACAAACGGAGTAGAATACAAGCTCAAGAACACGGCAAGCCGGCGCTCAGAAGAAGTTGGGGTCGTAT
CCGTTGCTGGAGGTGGCGAGGATGTAGTAGGCGACGATGTGGCCGAGCGAGCCCCAGGCGAGGACGTCGACGAGGTTGAAGCCCACGGGGTCGTTGGACT
TGAGCAGGGCCGAGAACTCCTTGGCGCGCTCGTCGCCGGCGTCGAAGTGCGTCTTGCCGTTCTGCTCTGGTACCTGCTTCGCCACGTTCTCCCGCTGGAA
GTTGAAGAAGACGAAGCGGCCCAGGAAGAGCGACACGCCCGTGCTCAGGCTGATCACCAGCGACGCGCTCAGCTCCGCACGCGGAGCCCGGCCACGGACG
GCGGGGACAGCACGGCGGCGGTCGATGTGGCCATA