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Detailed information on CNT30330447


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00327|PSAG_HORVU, E-value = 9e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512731Dioscorea rotundataJuglans regia29.7515.5786.7583forward
CNT30616151Dioscorea rotundataSesamum indicum49.825.7182.01139forward
CNT30540562Dioscorea rotundataBrassica napus24.7313.0986.9669forward
CNT30236839Dioscorea rotundataBrassica oleracea50.5422.9381.56141forward
CNT3082005Dioscorea rotundataBrassica juncea50.5416.0680.85141forward
CNT30262128Dioscorea rotundataBrassica rapa50.5419.4581.56141forward
CNT30449622Dioscorea rotundataSaccharum spontaneum31.914.0284.2789forward
CNT3013389Dioscorea rotundataZea mays37.2823.9684.62104forward
CNT30608608Dioscorea rotundataGossypium raimondii28.6729.288.7580forward
CNT30625145Dioscorea rotundataDaucus carota29.7510.0685.5483forward
CNT30362978Dioscorea rotundataSorghum bicolor37.2815.9582.69104forward
CNT30620686Dioscorea rotundataCajanus cajan28.677.3387.580forward
CNT30358383Dioscorea rotundataLactuca sativa27.615.4984.4277forward
CNT3049834Dioscorea rotundataCucumis sativus27.612.9487.0177forward

Expression of CNT30330447

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MQSHATCASIIKRSGKNIVSNNVANGTPCKNINYIEAHRVIRLEQAGELLCPLIAGFEVSFSVLAGHLLG

>peptide 2 (33 aa)
SLPPKNIHSPKDVHTTTSLTKSHAKPCNVCINN*

>peptide 3 (37 aa)
MWPMEPHARTSTILKPTGSLDLSKLENSFARSSPASK*

Sequence

>CNT30330447
TATCTCTCCCCCCCAAGAACATACACAGCCCTAAAGATGTACATACAACAACGTCATTAACAAAGAGCCATGCAAAGCCATGCAACGTGTGCATCAATAA
TTAAAAGAAGTGGCAAGAATATAGTAAGCAACAATGTGGCCAATGGAACCCCATGCAAGAACATCAACTATATTGAAGCCCACAGGGTCATTAGACTTGA
GCAAGCTGGAGAACTCCTTTGCCCGCTCATCGCCGGCTTCGAAGTGAGTTTTTCCGTTCTGGCCGGGCACTTGCTTGGC