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Detailed information on CNT3081347


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7N7|PSAG_ARATH, E-value = 6e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520411Brassica junceaSetaria italica29.1637.783.7184forward
CNT30512731Brassica junceaJuglans regia41.6849.3484.03263forward
CNT30616151Brassica junceaSesamum indicum48.6512.6283.71307forward
CNT30708956Brassica junceaGlycine max15.6930.3786.8799forward
CNT30394697Brassica junceaTriticum turgidum30.2730.1782.72191forward
CNT30541836Brassica junceaBrassica napus87.889.7990.97554forward
CNT30236818Brassica junceaBrassica oleracea64.6654.0493.38408forward
CNT30261892Brassica junceaBrassica rapa54.0430.9497.36341forward
CNT30449622Brassica junceaSaccharum spontaneum21.2421.185.82134forward
CNT3013389Brassica junceaZea mays15.0621.8988.4295forward
CNT30608608Brassica junceaGossypium raimondii11.2525.9190.1471forward
CNT30350071Brassica junceaEragrostis tef21.2426.6487.31134forward
CNT30620686Brassica junceaCajanus cajan40.2523.2881.89254forward
CNT30577680Brassica junceaOryza barthii21.2429.4587.31134forward
CNT30114891Brassica junceaEutrema salsugineum30.277192.67191forward

Expression of CNT3081347

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLNPTGSFDFKRLTYSLARSSPASKWVLPFCSGTCFATFSLWKLKKTNRPRKRERPVLRLITTDGLSSALTTAEEDLLPAVVESLGKEEAVE*

>peptide 2 (44 aa)
MEFGFFWEIAVEKVVAGVSKADALVAMFSSSSSFGEKERMCGFRF

Sequence

>CNT3081347
TGACGAAATATATTTAAATGTTGCAAAGAGGTGGAAGAAACAGAGATAAGAGAATAGACTAAGTAGCTTGCGATACAAGTCAAACATATACATAAACAAG
AGAGAGAACGAGAAGGAATCAGCCAAAGAAGCTAGGATCGTAGCCATTGCTAGAAGTGGCCAAGACATAGTAAGCAACGATGTGACCAATAGAACCCCAA
GCGAGAACATCGACGATGTTGAATCCAACAGGGTCGTTCGATTTCAAGAGGCTTACGTATTCCTTGGCACGATCGTCACCGGCTTCGAAGTGGGTTTTGC
CGTTCTGCTCCGGCACCTGTTTCGCCACATTCTCTCTCTGGAAGTTGAAGAAGACGAACCGGCCAAGGAAGAGGGAGAGGCCAGTGCTGAGGCTTATAAC
GACGGATGGGCTGAGCTCGGCTCTCACGACGGCGGAGGAAGATCTTCTCCCGGCGGTGGTGGAGAGCTTGGGTAAAGAGGAGGCCGTGGAATGAGATGGA
GTTCGGATTTTTCTGGGAGATTGCAGTGGAGAAGGTTGTTGCGGGTGTGAGCAAGGCAGATGCGCTTGTCGCCATGTTTTCTTCTTCTTCTTCTTTTGGA
GAGAAAGAGAGAATGTGTGGTTTTAGATTTA