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Detailed information on CNT30666063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520431Triticum dicoccoidesSetaria italica30.4523.2294.03134forward
CNT30512731Triticum dicoccoidesJuglans regia24.0919.8985.85106forward
CNT30616151Triticum dicoccoidesSesamum indicum30.455.5181.34134forward
CNT30224101Triticum dicoccoidesHordeum vulgare43.6475.8990.1192forward
CNT30394697Triticum dicoccoidesTriticum turgidum78.8654.8290.49347forward
CNT30250210Triticum dicoccoidesAvena sativa32.9527.2695.86145forward
CNT30449622Triticum dicoccoidesSaccharum spontaneum30.6821.2693.33135forward
CNT3013389Triticum dicoccoidesZea mays30.6831.1193.33135forward
CNT30362701Triticum dicoccoidesSorghum bicolor30.6821.594.07135forward
CNT30577739Triticum dicoccoidesOryza barthii26.8228.4394.92118forward
CNT30581136Triticum dicoccoidesEchinochloa crusgalli32.9524.4193.79145forward

Expression of CNT30666063

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MWPMEPQARTSTRLKPTGSLDLRMPANSLAEPGHGGRGQHGGGRGGHGPLELCGCSKTNVRRILDLG

>peptide 2 (40 aa)
MKTRQITTAQAAPAGTQAGTHGTDQPKKGGSYPLLVVARM*

>peptide 3 (37 aa)
MGRISRRRVGRIRCWWWRGCSRRRCGRWSPRRGRRRG*

>peptide 4 (33 aa)
NHQYTHAVALLVQINPSPSHIHTNMIVHHQRII*

Sequence

>CNT30666063
AATCATCAATACACACACGCGGTTGCACTACTTGTCCAGATTAATCCTTCACCATCTCACATACATACAAACATGATAGTACATCATCAGCGTATAATAT
AGAACTAATGAAAACACGGCAGATTACAACAGCACAAGCCGCTCCGGCCGGCACGCAGGCAGGCACACATGGGACGGATCAGCCGAAGAAGGGTGGGTCG
TATCCGTTGCTGGTGGTGGCGAGGATGTAGTAGGCGACGATGTGGCCGATGGAGCCCCAGGCGAGGACGTCGACGAGGTTGAAGCCGACGGGGTCGTTGG
ACTTGAGGATGCCGGCGAACTCCTTGGCGGAGCCCGGCCACGGTGGGCGGGGACAGCACGGCGGCGGTCGAGGTGGCCATGGCCCTCTAGAGCTGTGTGG
GTGTTCAAAGACCAACGTGCGGCGAATTCTTGATCTCGGC