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Detailed information on CNT30250210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520431Avena sativaSetaria italica27.2625.1391.03145forward
CNT30224101Avena sativaHordeum vulgare11.6524.5196.7762forward
CNT30394697Avena sativaTriticum turgidum27.6323.2295.24147forward
CNT30666063Avena sativaTriticum dicoccoides27.2632.9595.86145forward
CNT30449622Avena sativaSaccharum spontaneum28.0123.4691.95149forward
CNT3013389Avena sativaZea mays28.0134.3391.95149forward
CNT30608608Avena sativaGossypium raimondii15.7930.6683.3384forward
CNT30362701Avena sativaSorghum bicolor28.0123.7392.62149forward
CNT30620686Avena sativaCajanus cajan21.9910.7281.2117forward
CNT30577739Avena sativaOryza barthii22.3728.6792.44119forward
CNT30581136Avena sativaEchinochloa crusgalli28.0125.0891.28149forward

Expression of CNT30250210

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MWPMDPHARTSTMLKPTGSLDLRMPANSLARPLGDGARRSPATEGGDSTAAVEVAMGGVLVSPVGALLKNDQCAASS*

Sequence

>CNT30250210
TGGAGAAAGAGAGATAAAATTATTGATGTGGCAATGAATATACACACGCGTTTGCACTACTTGTCCAGATTAATTAATTAATCTTGCACCATCTCACATA
CATGATACATACATCATCAACGGTATAGAACTACTGAAAACACGGCAGATTACAACACAAGCTGCATGCAGGCAGGCAGGGGAGATCATCAGCCGGAGAA
GAAGGTGGGGTCGTATCCGTTGCTGGTGGTGGCGAGGATGTAGTAGGCGACGATGTGGCCGATGGATCCCCATGCGAGGACGTCGACGATGTTGAAGCCG
ACGGGGTCGTTGGACTTGAGGATGCCCGCGAACTCCTTGGCGCGCCCCCTCGGGGACGGTGCCAGGCGGAGCCCGGCCACGGAGGGCGGGGACAGCACGG
CGGCGGTCGAGGTGGCCATGGGTGGTGTCCTTGTTTCGCCGGTGGGTGCTCTGCTCAAGAACGACCAATGCGCGGCGAGTTCTTGATCGATCTCGGTAGG
CGCTTGGCTGTGTTATGTGTACGTGTGGTTTG