Detailed information on CNT30543069


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7N7|PSAG_ARATH, E-value = 3e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709225Brassica napusGlycine max25.8314.8785.15101forward
CNT30394760Brassica napusTriticum turgidum27.1115.4185.85106forward
CNT30590999Brassica napusMusa acuminata26.634.986.54104forward
CNT3076708Brassica napusBrassica juncea52.4352.5698.54205forward
CNT30449622Brassica napusSaccharum spontaneum29.4118.1184.35115forward
CNT3013389Brassica napusZea mays24.8122.3584.5497forward
CNT30350071Brassica napusEragrostis tef28.1321.8788.18110forward
CNT30362978Brassica napusSorghum bicolor28.6417.1883.93112forward
CNT30577680Brassica napusOryza barthii30.6926.3785120forward
CNT30581311Brassica napusEchinochloa crusgalli30.1815.0984.75118forward

Expression of CNT30543069

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTTDGLSSALTTAEEEDLLPEVVDSFGKAVE*

>peptide 2 (34 aa)
FDFKRLTYSLARSSPASKWVFPFCSGTCFATFSL*

>peptide 3 (43 aa)
VRFQEAYVLLGTIISRFEVGLPVLLRHLFCHILSLKVEEDEPA*

>peptide 4 (36 aa)
SISRGLRTPWHDHLPLRSGSSRSAPAPVLPHSLSES*

>peptide 5 (45 aa)
MRWSLGFSGRLRWRKLLVRAKQMRLSPPCYLLILWRVSVQERMSGF

>peptide 6 (43 aa)
MEFGFFWEITVEKVVGESKADALVAAMLSSYSLESFSARENEWF

Sequence

>CNT30543069
GTTCGATTTCAAGAGGCTTACGTACTCCTTGGCACGATCATCTCCCGCTTCGAAGTGGGTCTTCCCGTTCTGCTCCGGCACCTGTTTTGCCACATTCTCT
CTCTGAAAGTTGAAGAAGACGAACCGGCCTAGGAAGAGGGAGAGACCTGTGCTGAGGCTTATGACGACCGATGGGCTAAGCTCAGCTCTCACAACGGCGG
AGGAGGAAGATCTTCTTCCGGAGGTGGTGGATAGCTTTGGTAAGGCCGTGGAATGAGATGGAGTTTGGGTTTTTCTGGGAGATTACGGTGGAGAAAGTTG
TTGGTGAGAGCAAAGCAGATGCGCTTGTCGCCGCCATGTTATCTTCTTATTCTTTGGAGAGTTTCAGTGCAAGAGAGAATGAGTGGTTTTG