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Detailed information on CNT30362701


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00327|PSAG_HORVU, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520575Sorghum bicolorSetaria italica35.9933.6896.9226forward
CNT30512731Sorghum bicolorJuglans regia34.3940.5380.09216forward
CNT30394697Sorghum bicolorTriticum turgidum33.4433.1894.29210forward
CNT30250210Sorghum bicolorAvena sativa23.7328.0192.62149forward
CNT30666063Sorghum bicolorTriticum dicoccoides21.530.6894.07135forward
CNT30449622Sorghum bicolorSaccharum spontaneum62.7462.0596.19394forward
CNT3013389Sorghum bicolorZea mays35.9952.0798.23226forward
CNT30680084Sorghum bicolorTriticum urartu31.5338.0888.89198forward
CNT30577739Sorghum bicolorOryza barthii20.8631.5794.66131forward
CNT30581136Sorghum bicolorEchinochloa crusgalli26.2727.7896.36165forward

Expression of CNT30362701

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MWPSEPQARTSTRLKPTGSLDLSRAANSLARSSPASKCVLPFCAGTCFATFSRWKRPARRPGPRRVLAKRPGGYLP*

>peptide 2 (29 aa)
KKTEKHRGRSNSCGTIHAQLHYLSKLTNL*

>peptide 3 (54 aa)
MAQSQTHTRSRIQAQEHGQPALRRSWGRIRCWRWRGCSRRRCGRASPRRGRRRG*

>peptide 4 (33 aa)
MRHYTRAVTLLVQINQSLSIRYMHGAEPDTHTE*

Sequence

>CNT30362701
TGAAGAAGACAGAGAAACATAGAGGAAGATCAAATTCATGCGGCACTATACACGCGCAGTTACACTACTTGTCCAAATTAACCAATCTTTGAGCATCAGA
TACATGCATGGCGCAGAGCCAGACACACACACGGAGTAGAATACAAGCTCAAGAACACGGCCAGCCGGCGCTCAGAAGAAGTTGGGGTCGTATCCGTTGC
TGGAGGTGGCGAGGATGTAGTAGGCGACGATGTGGCCGAGCGAGCCCCAGGCGAGGACGTCGACGAGGTTGAAGCCCACGGGGTCGTTGGACTTGAGCAG
GGCCGCGAACTCCTTGGCGCGCTCGTCGCCGGCGTCGAAGTGCGTCTTGCCGTTCTGCGCGGGCACCTGCTTCGCCACGTTCTCCCGCTGGAAGCGGCCA
GCGCGGCGGCCAGGGCCGCGGCGGGTGTTGGCGAAGAGGCCCGGCGGGTACTTGCCGTAGAGGTTGATGTAGCTGAACATGGTGGCGGCGCAGTTGGTCG
TGACGTCGTTGATGTAGGTGGCGTAGGGGCACGCGAAGTCCTTGAGCGCGCCGCAGCACAGCGTCGGCTGGTACAGCGGGCCCTTGCACCGGCTCGTGAT
GATCGTGTAGTTGGCGCCCTCGAAGCTC