Detailed information on CNT301559


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Zea maysSetaria italica9.1831.1596.8495forward
CNT30562915Zea maysActinidia chinensis8.9940.7990.3293forward
CNT30553219Zea maysOryza glaberrima7.6338.3597.4779forward
CNT30440804Zea maysAegilops tauschii5.728.7891.5359reverse complement
CNT30136398Zea maysLolium perenne7.3437.0792.1176forward
CNT30720027Zea maysTriticum spelta7.5438.2494.8778forward
CNT3040646Zea maysMarchantia polymorpha8.993088.1793forward

Expression of CNT301559

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MEEALSRGDRRVRRRLSLRLCGAGLGFRLFPSARFI

>peptide 2 (32 aa)
MWIEMHSLMVSTEWGGAAAAAVGNGRSFESRR*

>peptide 3 (68 aa)
MENNAQFRLIAIRVFYPKIQIKTTEPRSDTISPYIRIRPDKRGSGQPPSHTARSLQIYRFEMPFPPPI*

>peptide 4 (53 aa)
MEEELDSSLPECHARGSRAPSTRFRPGYRLGRCGSRCTPSWCRRNGVELQRRR*

>peptide 5 (47 aa)
MLEAVELPARVSDLDTGLADVDRDALPHGVDGMGWSCSGGGRKWKKL*

Sequence

>CNT301559
CCAACAGTAGCCCTATTTTATAAAAAATCATCAAAAGATTATAGGGCTCGGTCTCTCGGGTCCTAAATATAGTACACCGTTGGAGCCCTATCCTCCTTTC
CTCTTAGTCTACAACTATTTATTTCCTAATAACGTGATTTATTTCCTAAATAGAATTATTTAAGGCCTAACTGTTGGAGTAATCCTAAACACACTTTAAA
TACGGTCCTATTTTAACTTTTAGGGCTCTATTTTAGAGCTCCTTGTTGGAGATGCTCTAACAGTACGAATAGATGTATTGTACATCAATTAACATTAAGT
ATACTAACTCTGTAACCGTACATCGAATCGAAGGTATAGGCATGCAATAGGAACTTGGCCTATGAAAATTTACAGATCGTGAATGCCTGTGCATTTAAAC
GATTTCAGGGCACTCACACCTAACACACGTATAGGCATAAATTAACAACAAATATGATACATAACTACTAAATTCATTGGATCATGGAAAATAATGCGCA
ATTTCGGCTAATCGCCATTCGAGTTTTCTATCCAAAAATCCAGATAAAAACAACCGAACCTCGATCAGACACCATCTCACCATATATACGGATCAGACCT
GACAAACGCGGATCTGGGCAGCCACCATCACATACAGCCAGATCCCTACAGATCTACCGATTTGAAATGCCATTTCCTCCCCCGATTTAGTCCCACCGAA
TACAGCACGCATCAGCGACGGAAGTCCCATACCGATTACACATCTAACCTAACAGTGCGAGAATGGAAGAGGAATTGGACAGCTCGTTACCTGAATGCCA
TGCTCGAGGCAGTAGAGCTCCCAGCACGCGTTTCCGACCTGGATACCGGCTTGGCCGATGTGGATCGAGATGCACTCCCTCATGGTGTCGACGGAATGGG
GTGGAGCTGCAGCGGCGGCGGTAGGAAATGGAAGAAGCTTTGAGTCGCGGAGATAGGCGAGTACGAAGACGCCTGTCTCTGCGCCTCTGCGGTGCTGGGC
TAGGGTTCCGGCTCTTCCCCTCGGCTCGCTTTATA