Detailed information on CNT30301189


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673064Triticum aestivumSetaria viridis9.8927.4690.1281reverse complement
CNT30184361Triticum aestivumSecale cereale14.2922.296.58117forward
CNT30396261Triticum aestivumTriticum turgidum39.9325.1399.69327forward
CNT30440804Triticum aestivumAegilops tauschii12.750.7395.19104forward
CNT30688036Triticum aestivumTriticum urartu13.822.694.69113forward
CNT30368401Triticum aestivumSorghum bicolor12.5828.6189.32103reverse complement

Expression of CNT30301189

Peptides detected in this lncRNA

>peptide 1 (72 aa)
SGVDKYNILSRFTCNAFYLDSKSTIGVEFATRTLLASTHPRSINRCHSLLCSPLDPMYQSSDSLPRYLALQI*

>peptide 2 (57 aa)
MLVPGPDVQVQPHPLHRPRVNITIKYAIKVIHHSTINYALLYLLSLVLLFAGKHKEN*

>peptide 3 (54 aa)
RPASTSTTSSPASPATRSTSTPSPPSASSSPPAPSSRVLTPVPLIVVIPCFARR*

>peptide 4 (55 aa)
MRFREEMLLPAYTSSYVSSKVRLDERGCYSALICTQRVLGPDLKQGYLRLQANNV*

>peptide 5 (37 aa)
MPTCLLPYYVLLELTLFMSKPGFILFACRHHSSVGMFT

>peptide 6 (43 aa)
VRRRQVQHPLPLHLQRVLPRLQVHHRRRVRHPHPPREYSPPFH*

Sequence

>CNT30301189
CGTCCGGCGTCGACAAGTACAACATCCTCTCCCGCTTCACCTGCAACGCGTTCTACCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAC
CCTCCTCGCGAGTACTCACCCCCGTTCCATTAATCGTTGTCATTCCTTGCTTTGCTCGCCGCTAGATCCGATGTATCAGTCTAGTGATTCGCTGCCCAGA
TATCTTGCACTCCAGATCTAGTGATTCGCTGCTTGCAAACAATAGCTAGTAAATCGGTCACCATGGGGACGGGGACATGAGATTCAGAGAAGAGATGCTG
CTGCCAGCCTATACTAGTTCATATGTATCCAGCAAAGTGCGGCTGGACGAACGAGGCTGCTATTCTGCCTTGATCTGCACACAAAGAGTTCTTGGACCTG
ACCTGAAGCAAGGATACCTGCGGCTGCAAGCCAACAATGTCTGAAGACAGGCGCTGCTTGTCGATGTTCTCCGCATAACGATAGGCTTCCATGCTCGTCC
CTGGACCAGATGTTCAAGTACAGCCCCATCCACTGCATCGACCTAGAGTCAACATCACCATCAAGTACGCCATCAAAGTAATTCACCACTCCACCATCAA
CTATGCTTTGCTCTACTTGCTCTCCTTAGTTTTGCTCTTTGCTGGAAAGCACAAAGAAAATTGAAGCTATGTAGATGATTTGATCTGAAGAGGGTCAAAG
AGAAAATGCCCACATGTTTACTGCCTTATTATGTTCTGCTTGAGTTGACACTATTTATGTCCAAACCTGGGTTTATACTCTTTGCTTGTCGTCATCACTC
ATCGGTTGGGATGTTTACT