Detailed information on CNT3041226


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 4e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440804Chlamydomonas reinhardtiiAegilops tauschii11.7428.2993.158reverse complement
CNT3079816Chlamydomonas reinhardtiiBrassica juncea19.2334.5585.2695forward
CNT30719750Chlamydomonas reinhardtiiTriticum spelta20.6542.8683.33102forward

Expression of CNT3041226

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLARGLECGNTLVLLTLALAGGPGRCNGARACRHRSPRRRC*

>peptide 2 (90 aa)
HTLAAVPESELCCCSALPTQVPAPALTRHVPGFLLILYSKPIEARSWMFTTHECHLQSSSSFDQASISTATTLRFSNEASDHAAQDTLTC*

>peptide 3 (42 aa)
MQRGTCLPAPVSEKKVLKASSPPPMVLSEGIWPSGWMPCSRQ*

>peptide 4 (52 aa)
SHPCCCARIRTVLLQCPSNPSPRPSPDKTRPWLSSHPLQQANRGTFVDVHDP*

Sequence

>CNT3041226
CTCACACCCTTGCTGCTGTGCCCGAATCCGAACTGTGCTGCTGCAGTGCCCTTCCAACCCAAGTCCCCGCCCCAGCCCTGACAAGACACGTCCCTGGCTT
TCTTCTCATCCTTTACAGCAAGCCAATAGAGGCACGTTCGTGGATGTTCACGACCCATGAGTGTCACTTGCAGTCGTCATCATCATTTGACCAAGCTAGC
ATAAGTACAGCCACAACGCTACGCTTTTCCAACGAAGCCTCAGATCACGCCGCACAGGACACGCTCACATGCTAGCTCGTGGGTTGGAGTGCGGGAATAC
TCTAGTACTCCTCACCCTCGCCCTCGCCGGCGGTCCAGGAAGATGCAACGGGGCACGTGCTTGCCGGCACCGGTCTCCGAGAAGAAGGTGTTGAAGGCAT
CGTCGCCACCGCCAATGGTCTTGTCGGAGGGCATCTGGCCATCAGGCTGGATGCCGTGCTCCAGGCAGTAAAGCTCCCAGCAGGCATTGCCCAC