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Detailed information on CNT30562915


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677695Actinidia chinensisSetaria viridis32.468.8791.8974forward
CNT30522084Actinidia chinensisSetaria italica32.4624.2693.2474forward
CNT30317272Actinidia chinensisCorylus avellana34.2120.0593.5978forward
CNT30709004Actinidia chinensisGlycine max26.7522.6893.4461forward
CNT3099067Actinidia chinensisSolanum tuberosum42.987.1687.7698reverse complement
CNT30553219Actinidia chinensisOryza glaberrima32.4635.9291.8974forward
CNT30440804Actinidia chinensisAegilops tauschii24.5627.3287.556reverse complement
CNT30136398Actinidia chinensisLolium perenne34.6538.5488.6179forward
CNT301559Actinidia chinensisZea mays40.798.9990.3293forward
CNT30624589Actinidia chinensisDaucus carota32.8915.128875forward
CNT30720027Actinidia chinensisTriticum spelta31.1434.891.5571forward
CNT30369756Actinidia chinensisOryza glumipatula39.046.5689.8989forward
CNT30704384Actinidia chinensisPrunus avium41.6717.0691.5895forward
CNT3040646Actinidia chinensisMarchantia polymorpha42.9831.6188.7898forward

Expression of CNT30562915

Peptides detected in this lncRNA

>peptide 1 (74 aa)
ECRVRDSRAPSRRFRPGSRPDRCGSKCTLSFSVVDCLLCLLARERDDRERERDDVYKDVCERMRCEGWIEGEGIK

>peptide 2 (75 aa)
LNAVFETVELPAGVSDLDPGLTDVDRNALSHFRWLIACFACSLERETTERERETTYTKTSARECDVKAGSRERGLN

Sequence

>CNT30562915
CTGAATGCCGTGTTCGAGACAGTAGAGCTCCCAGCAGGCGTTTCCGACCTGGATCCCGGCCTGACCGATGTGGATCGAAATGCACTCTCTCATTTTCGGT
GGTTGATTGCTTGCTTTGCTTGCTCGCTAGAGAGAGAGACGACAGAGAGAGAGAGAGAGACGACGTATACAAAGACGTCTGCGAGAGAATGCGATGTGAA
GGCTGGATCGAGGGAGAGGGGATTAAAT