Detailed information on CNT30553219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Oryza glaberrimaCorylus avellana36.8919.5489.4776forward
CNT30709004Oryza glaberrimaGlycine max27.1820.8287.556forward
CNT3099067Oryza glaberrimaSolanum tuberosum37.385.6284.4277reverse complement
CNT30562915Oryza glaberrimaActinidia chinensis35.9232.4691.8974forward
CNT30440804Oryza glaberrimaAegilops tauschii21.3621.4690.9144reverse complement
CNT301559Oryza glaberrimaZea mays38.357.6397.4779forward
CNT30720027Oryza glaberrimaTriticum spelta40.7841.1897.6284forward
CNT30369756Oryza glaberrimaOryza glumipatula42.236.4110087forward
CNT30704384Oryza glaberrimaPrunus avium37.3813.8288.3177forward
CNT3040646Oryza glaberrimaMarchantia polymorpha32.0421.2992.4266forward

Expression of CNT30553219

Peptides detected in this lncRNA

>peptide 1 (30 aa)
AVELPARVPDLDTGLADVDRDALPHGGGLG*

>peptide 2 (67 aa)
GSRAPSTRSRPGYRPGRCGSRCTPSWRRIGLMLRRRRRRERGERRKSAEARREASTKTPFSALSRLRV

>peptide 3 (49 aa)
MWIEMHSLMAADWVDAATAAEKGERGEEEKRGGAERGEYEDAFLCVVSA*

Sequence

>CNT30553219
AGGCAGTAGAGCTCCCAGCACGCGTTCCCGACCTGGATACCGGCCTGGCCGATGTGGATCGAGATGCACTCCCTCATGGCGGCGGATTGGGTTGATGCTG
CGACGGCGGCGGAGAAGGGAGAGAGGGGAGAGGAGGAAAAGCGCGGAGGCGCGGAGAGAGGCGAGTACGAAGACGCCTTTCTCTGCGTTGTCTCGGCTTA
GGGTTT