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Detailed information on CNT30381493


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 3e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641080Manihot esculentaNymphaea colorata37.2531.1784.95279forward
CNT30374620Manihot esculentaArabidopsis thaliana37.9232.7984.51284forward
CNT30266631Manihot esculentaChenopodium quinoa26.4422.686.87198forward
CNT30194995Manihot esculentaPisum sativum25.3719.9684.74190forward
CNT30158121Manihot esculentaPistacia vera25.7730.8890.16193forward
CNT30638840Manihot esculentaCapsicum annuum31.6427.7586.08237forward
CNT30441436Manihot esculentaAegilops tauschii33.3849.3183.6250forward
CNT3059692Manihot esculentaArabidopsis lyrata11.4829.7687.2186forward
CNT30624603Manihot esculentaDaucus carota40.8546.3685.62306forward
CNT30477100Manihot esculentaArabidopsis halleri10.8120.5187.6581forward
CNT30620815Manihot esculentaCajanus cajan23.3623.9487.43175forward
CNT30358838Manihot esculentaLactuca sativa37.1240.6482.73278forward
CNT30571189Manihot esculentaVitis vinifera26.5732.3188.44199forward
CNT3022468Manihot esculentaPopulus trichocarpa71.9663.0488.87539forward
CNT30148817Manihot esculentaBrachypodium distachyon21.2313.7587.42159forward
CNT30101681Manihot esculentaOryza rufipogon25.237.3883.6189forward
CNT30496713Manihot esculentaDigitaria exilis24.8312.3584.95186forward

Expression of CNT30381493

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MTKRPDGLRWKMVFSSRYFSGMTALMTCSLRSAAISSFVTVSSCWVEMRTVCTRTGTIAPLSL*

>peptide 2 (40 aa)
MFLEVSGNLIICDSLIVLGGDEDSVYTDWDHCTIVIVVLDS

Sequence

>CNT30381493
AGGGCATTTTATGTATTAGATTAGACCATTGCAGACTTTTAGATTTGTAGTGCAGCAGTAAGAAACACGCCAACTTATTCATCAACCAGCCAAAGCAAGC
ACCGACAGCAGGGATAGGATAAATCACACTTAAGCCTGAGGCTTATCCCACTTGAGGGGCTTGACGACCTCCCAGGTGAAGTCTGGGTCATCTCTTCCAA
AGTGTCCATAGGCAGCTGTCTTCAAGAACCTGTTGCCTCCTCTCTTCAGGTCTAGGTTGATGGTCATCATTCCAGGTCTAAAGTCAAAATTCTCTTTCAC
AATCTTGAGAATCTCCTTGTCAGGAATCTTTCCTGTTCCATAGGAAACCTGCACGATACACCGGCGAGCAAGACCATTTGCTACAATACTCTTGGCTGCC
TGCCTAACAATATAAGCACCGCTCCTGTCCACCTTGGTTGGGTCCTTTCCTGAAAAGGCACCACCACCATGGGCCCCCCAGCCACCATAGGTGTCAATAA
TGATCTTGCGTCCAGTTAGTCCTGCATCACCGTGAGGACCACCAATGACAAAACGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCATCAAGGTACTT
CTCAGGGATGACAGCTTTGATGACATGTTCCTTGAGGTCAGCGGCAATCTCATCATTTGTGACAGTCTCATCGTGCTGGGTGGAGATGAGGACAGTGTGT
ACACGGACTGGGACCATTGCACCATTGTCATTGTAGTACTCGACAGTTA