Detailed information on CNT30363345


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672296Sorghum bicolorSetaria viridis75.6384.8588.53689forward
CNT30225636Sorghum bicolorHordeum vulgare66.5272.1491.25606forward
CNT30387004Sorghum bicolorTriticum turgidum49.0761.491.72447forward
CNT30243048Sorghum bicolorAvena sativa75.379.4990.23686forward
CNT30458211Sorghum bicolorSaccharum spontaneum91.2298.3494.22831forward
CNT30722465Sorghum bicolorTriticum spelta75.5260.9488.66688forward
CNT30150301Sorghum bicolorBrachypodium distachyon75.5248.7387.79688forward
CNT30100520Sorghum bicolorOryza rufipogon75.5269.3588.23688forward
CNT30583684Sorghum bicolorEchinochloa crusgalli78.4934.0690.49715forward
CNT30603673Sorghum bicolorOryza punctata75.6369.6787.66689forward

Expression of CNT30363345

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MAETTGTKTTQVHSSSFDDQWLTAHHGDGAPGGGCSPSGYCSRQGCAHPPAACQRRSDAAGPGECPPCPGSWP*

>peptide 2 (53 aa)
MPSLSWILALTLSMVSEDSTSSVMVLPVRVLTKICMPPLRRRTKWRVLSFWIL*

>peptide 3 (44 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPLRRRTR*

Sequence

>CNT30363345
GCACCATGCACGCAGATTTTTAAAGTTCAAACACCACTTATTTGATAAAGCATACTGCTGCACCAACTGTTCCTGGTAAAATACTTGGGACACAACCCGT
CCACGAAACTAAACTGAATTACAAGAGAAACCACAGATACTTAAAAGAGGACACCCTCCATGGCAGAGACCACAGGCACAAAGACAACGCAGGTACACAG
CAGCAGCTTCGACGACCAATGGCTTACTGCCCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGCC
CATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGA
GGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGCCTCCCCTAAGGCGGAGGACAAGGTGAAGGGTGGATTCCTTC
TGGATATTGTAGTCGGCGAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT
TGGCCTTGACATTGTCAATGGTGTCTGAGGACTCCACCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGCCTCCCCTGAGGCG
GAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCT
GGGGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTAA
CAAAGATCTGC