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Detailed information on CNT30722465


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Triticum speltaOryza sativa73.6955.7388.34832forward
CNT30191758Triticum speltaSecale cereale74.1454.9689.13837forward
CNT30303464Triticum speltaTriticum aestivum67.2388.8898.29759forward
CNT30226205Triticum speltaHordeum vulgare73.1680.0488.5826forward
CNT30397375Triticum speltaTriticum turgidum67.2343.6298.29759forward
CNT30553681Triticum speltaOryza glaberrima73.6976.8988.7832forward
CNT30242602Triticum speltaAvena sativa73.6972.7991.11832forward
CNT30667756Triticum speltaTriticum dicoccoides58.1996.4898.33657forward
CNT30461176Triticum speltaSaccharum spontaneum73.6924.4187.86832forward
CNT30141956Triticum speltaLolium perenne74.1475.0790.44837forward
CNT307928Triticum speltaZea mays73.6969.888.58832forward
CNT30228911Triticum speltaAnanas comosus73.2553.1186.34827forward
CNT30716337Triticum speltaMalus domestica golden70.9564.6586.77801forward
CNT30348745Triticum speltaEragrostis tef69.8871.0286.44789forward
CNT30363345Triticum speltaSorghum bicolor60.9475.5288.66688forward
CNT30595796Triticum speltaOryza meridionalis73.6964.390.14832forward
CNT30110940Triticum speltaOryza longistaminata73.6930.6888.82832forward
CNT30150301Triticum speltaBrachypodium distachyon61.1248.8789.71690forward
CNT30116770Triticum speltaOryza nivara73.6959.5188.46832forward
CNT30593897Triticum speltaEragrostis curvula73.67488.93831forward
CNT30603673Triticum speltaOryza punctata61.269.8789.73691forward
CNT30174695Triticum speltaVigna angularis71.2177.1685.7804forward

Expression of CNT30722465

SRR9114152: 17.05 RPKM

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTR*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSSVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSSVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30722465
GGAAGGTAAAATGTGCATAGGCAGATTAGTTCAAAGTTCACTTATTCATACTTGACCGTACTGCTATAGCAGCAACTGTTTAAACGAAACCAACACATCT
CACAACTGTTTAAACGAAACCAACACATCTCACAACTGTTTAAACGAAACCAACACATCTCACAACTGTTTAAACGAAACCAACACATCTCACAGGGACT
CGATGGTCCATGAAACCAGACACGGTAGGACTTGACACAAACGAGACTTAACACTTCACACGAGCGACAGGGGCACCCACCAGAGTACTCAGGGCATTTA
CTGACCACCGCGGAGGCGGAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAG
ATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGAGTGATGGTCT
TGCCGGTAAGGGTCTTCACAAAGATCTGCATACCACCTCGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCT
GCCATCCTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATGGTGTCC
GAGGACTCCACCTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCTCGAAGACGCAGCACAAGGTGGAGGGTGGACTCCT
TCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGAT
CTTTGCCTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGCGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCACGAAGA
CGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGT
CCGGGGGGATGCCCTCCTTGTCCTGGATC