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Detailed information on CNT30150301


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Brachypodium distachyonOryza sativa49.2931.989.37696forward
CNT30673590Brachypodium distachyonSetaria viridis40.5870.6591.62573forward
CNT30526024Brachypodium distachyonPhaseolus vulgaris47.3850.5786.7669forward
CNT30225636Brachypodium distachyonHordeum vulgare43.2772.7490.51611forward
CNT30553681Brachypodium distachyonOryza glaberrima48.9463.8687.99691forward
CNT30458211Brachypodium distachyonSaccharum spontaneum46.2577.2888.82653forward
CNT307928Brachypodium distachyonZea mays48.8757.8988.99690forward
CNT30722465Brachypodium distachyonTriticum spelta48.8761.1289.71690forward
CNT30348745Brachypodium distachyonEragrostis tef46.0358.5187.69650forward
CNT30363345Brachypodium distachyonSorghum bicolor48.7375.5287.79688forward
CNT30110940Brachypodium distachyonOryza longistaminata46.8124.3788.8661forward
CNT30100520Brachypodium distachyonOryza rufipogon48.8769.5690.29690forward
CNT30116770Brachypodium distachyonOryza nivara47.2447.7188.76667forward

Expression of CNT30150301

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVKVFTKICIPPRRRSTR*

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVKVFTKICIPPRRRRTR*

>peptide 3 (69 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVKVFTKICICRRIPRQHGKPPRVDKQSTRTKQKV*

Sequence

>CNT30150301
TTATAATGCCAAACTTCACTTATGCTTTCTCATAGTACTTAAAACCATACTGCTATAGCAGTAACTGTTTGCACGAAACCAACAGACACTGGGGGGACTC
GATGGTCCATCAACCAGACACAGGTAGACTTAACACGAACTGAGACAGATACTTCAGAGGGCAAGAGCAGACCATTACTGACCACCTCGAAGGCGGAGCA
CCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGGG
AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAG
ATCTGCATACCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAG
CAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCCACCTCAAGGGTGAT
GGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATACCACCACGCAGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGG
GTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGG
TGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATCTGCAGAAGAATCCCCAGACAGCATGGTAAGCCTCC
ACGAGTAGACAAGCAGTCAACACGAACAAAACAGAAAGTATAAACATATAGATACGCCTCCATACATCCTATCCAAGATAATCAAAACAATAGATAAGAA
ACATACAGATTAACAGATGAGACGCAAGCAATCAGGAATTCCATAAAAAAAATAGACAAGCACCCGATTAACAATTCTAGATCTAGAGGTGATAAGGCCT
GCGTATTCGAGATATTGACACGGATCTAACACAAACCAAAGATCTGACGCCGAAACTCATCATCGGACCAGGAACATGCAGGAATCGAACAAATCTACCA
GTAATTTCCGCCCCCAACGACTTGAGATTCGACGTAGCGGCTAGGGAACAACACGTAGACCTAGAAGACGAGACGGGGTAAAGGGGGGGGGGGGGGGGTG
AAGCAGCTCGGTACCTTGGGGAGGCGGGGGGAAGGAGATTCTTCGACGAGCCTCGAGGCGACCGGAGACGAGATTTGGGGATCGGATTTGTTGGTTCCGT
TCCTTGGAGCGG