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Detailed information on CNT30458211


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-142

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Saccharum spontaneumOryza sativa77.2829.9388.21653forward
CNT30225636Saccharum spontaneumHordeum vulgare71.9572.3889.8608forward
CNT30395844Saccharum spontaneumTriticum turgidum54.5629.891.11461forward
CNT30242973Saccharum spontaneumAvena sativa77.2824.6889.43653forward
CNT30363345Saccharum spontaneumSorghum bicolor98.3491.2294.22831forward
CNT30595771Saccharum spontaneumOryza meridionalis77.2861.7888.36653forward
CNT30150301Saccharum spontaneumBrachypodium distachyon77.2846.2588.82653forward
CNT30100520Saccharum spontaneumOryza rufipogon77.2865.8388.67653forward

Expression of CNT30458211

Peptides detected in this lncRNA

>peptide 1 (65 aa)
FMIKPHTAAPTTVPGKTLGTQPVHETKLNYKTNHRYLKEDTLHGRDQRHKDNPGTQQQLQRPMPY*

>peptide 2 (53 aa)
MPSLSWILALTLSIVSEDSTSRVMVLPVKVFTKICMPPLRRSTKWRVLSFWIL*

>peptide 3 (86 aa)
MAETRGTKTTQVHSSSFNDQCPTDHRGDGAPGGGCSPSGCCSQRECAHPPAACRRRSDAAGLGECPPCPGSWPSHCQWCPRTPPQG*

>peptide 4 (30 aa)
MSRCWSGGMPSLSWILALTLSIVSEDSTSRV

>peptide 5 (44 aa)
MPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICMPPLRRRTR*

Sequence

>CNT30458211
TTCATGATAAAGCCGCATACTGCTGCACCAACAACTGTTCCTGGTAAAACACTTGGGACACAACCCGTCCACGAAACTAAACTGAATTACAAGACAAACC
ACAGATACTTAAAAGAGGACACCCTCCATGGCAGAGACCAGAGGCACAAAGACAACCCAGGTACACAGCAGCAGCTTCAACGACCAATGCCCTACTGACC
ACCGCGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGAGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGA
CGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG
TGAGGGTCTTCACGAAAATCTGCATGCCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCGAGGGTCCTGCCATC
CTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATCGTGTCTGAGGAC
TCCACCTCAAGGGTAATGGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCATGCCTCCCCTCAGGCGGAGCACCAAGTGGAGGGTGCTCTCCTTCTGGA
TATTGTAGTCAGCAAGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGC
TTTGACGTTGTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGAT