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Detailed information on CNT30100520


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Oryza rufipogonOryza sativa10045.4696.67992forward
CNT30672296Oryza rufipogonSetaria viridis69.4684.8588.24689forward
CNT30190365Oryza rufipogonSecale cereale68.1563.4190.98676forward
CNT30306465Oryza rufipogonTriticum aestivum69.4675.8889.26689forward
CNT30226205Oryza rufipogonHordeum vulgare68.8566.1888.29683forward
CNT30395844Oryza rufipogonTriticum turgidum46.6729.9391.79463forward
CNT30553681Oryza rufipogonOryza glaberrima69.7663.9687.57692forward
CNT30242438Oryza rufipogonAvena sativa69.4674.0991689forward
CNT30669573Oryza rufipogonTriticum dicoccoides69.4670.2389.7689forward
CNT30458211Oryza rufipogonSaccharum spontaneum65.8377.2888.67653forward
CNT30141474Oryza rufipogonLolium perenne69.4674.9791.15689forward
CNT308249Oryza rufipogonZea mays66.5374.6687.88660forward
CNT30230519Oryza rufipogonAnanas comosus66.9466.8787.35664forward
CNT30689812Oryza rufipogonTriticum urartu68.7536.1690.32682forward
CNT30722254Oryza rufipogonTriticum spelta65.7399.5490.34652forward
CNT30349330Oryza rufipogonEragrostis tef46.4729.7491.97461forward
CNT30363345Oryza rufipogonSorghum bicolor69.3575.5288.23688forward
CNT30595657Oryza rufipogonOryza meridionalis96.5790.1294.57958forward
CNT30107350Oryza rufipogonOryza longistaminata76.6188.0696.18760forward
CNT30150301Oryza rufipogonBrachypodium distachyon69.5648.8790.29690forward
CNT30575387Oryza rufipogonOryza barthii57.6610093.36572forward
CNT30583684Oryza rufipogonEchinochloa crusgalli69.4632.8387.81689forward
CNT30115854Oryza rufipogonOryza nivara74.698.1492.97740forward
CNT30593848Oryza rufipogonEragrostis curvula69.3577.1387.79688forward
CNT30603673Oryza rufipogonOryza punctata93.7594.0389.14930forward
CNT30174695Oryza rufipogonVigna angularis66.6363.4486.84661forward
CNT30550711Oryza rufipogonOryza brachyantha70.67100.1489.73701forward

Expression of CNT30100520

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKIC

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPLRRRTR*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVSVLTKICMPPRRRRTR*

Sequence

>CNT30100520
TCATTAAGATAAAAGTAAATGACGATTTAATAAGAATATGCAGCATTTTCAAACTTGCAACTCAAATAAAACATCAACAGGAATGAGATGCAAATGAGCA
AATTGAGCACATATTTAGGTTCAAATCCAACTTATTCATAAAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGA
TGGTCCATTAAACCAGACACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCACATCGGCAGCTCCACCAAACTGGC
TGATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCA
GCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGA
TGGTCTTGCCGGTCAGAGTCTTCACGAAGATTTGCATGCCTCCCCTGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCAGCAAG
GGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATG
GTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCG
ACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATC
TTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCA