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Detailed information on CNT30387004


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-101

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180697Triticum turgidumSecale cereale93.9638.9392.54684forward
CNT30225690Triticum turgidumHordeum vulgare60.1665.1893.84438forward
CNT30363345Triticum turgidumSorghum bicolor61.449.0791.72447forward

Expression of CNT30387004

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTK

>peptide 2 (44 aa)
MPSLSWILALTLSMVSDDSTSSVMVLPVRVLTKICMPPRRRRTR*

Sequence

>CNT30387004
GTAGGCTCAAGCAAGCAATTCAAGCGCAAGCAATGAACAGATATGAGTAAGATCATTGCCAAGCAAGCAACTCAAGCACAAGATTTACCCGAAAGTTCAC
TTATTCATTACTTAAAATGAAACTGCTGTACTAGCAATTTCGCAAACCAACACGTAACAGTGATTCGGTAGTTCATTAAACCCAACATAGGACTGACGCG
AACAAAAAACTGTTCAAATGAGCGGACACAACGGACGACCAAGGATAAACCAGCAGGTCCAACGCCAGGGCAATTACTGACCACCACGGAGGCGGAGCAC
AAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGGTCCGGGGGA
ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGACGACTCCACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGA
TCTGCATGCCTCCCCGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGC
GAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTAATG
GTCTTGCCTGTGAGGGTCTTCACGAAGA