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Detailed information on CNT30243048


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363345Avena sativaSorghum bicolor79.4975.390.23686forward

Expression of CNT30243048

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTR*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 3 (29 aa)
FDTKLRVHLFIHHDSSKAASPQQKFVGTE*

>peptide 4 (41 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKI

Sequence

>CNT30243048
TTTGACACTAAGTTGAGGGTTCACTTATTCATTCATCACGATTCATCCAAAGCTGCTTCACCACAGCAGAAGTTTGTAGGCACAGAATAAAGTCACACTA
ACAAGGCAGGACCAAATACACTACCAGACGACACACCGAAGAGACCAGACTTGTGAACCCAGAGACAGAACCAGCTCCTTACTGCCCACCACGGAGGCGA
AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCG
GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC
GAAGATCTGCATGCCTCCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTA
CCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTATCTGATGACTCCACCTCCAGGG
TGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCTCCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC
AAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCA
ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATC